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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3egt 722 Farnesyl pyrophosphate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3egt 722Farnesyl pyrophosphate synthase / 1.294
3dyh 721Farnesyl pyrophosphate synthase / 1.055
3icz PB6Farnesyl pyrophosphate synthase / 1.007
4h5d YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.894
4h5c YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.879
4dem YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.864
4kqs RISFarnesyl pyrophosphate synthase 2.5.1.10 0.864
4h5e YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.858
2f94 BFQFarnesyl pyrophosphate synthase 2.5.1.10 0.836
3ldw ZOLFarnesyl pyrophosphate synthase, putative / 0.836
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.822
4ga3 4GAFarnesyl pyrophosphate synthase 2.5.1.10 0.820
4nke RISFarnesyl pyrophosphate synthase 2.5.1.10 0.820
4dxj 0M9Farnesyl pyrophosphate synthase / 0.807
4q23 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.797
4lfv YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.794
1zw5 ZOLFarnesyl pyrophosphate synthase 2.5.1.10 0.783
1yv5 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.764
4jvj 1MVFarnesyl pyrophosphate synthase 2.5.1.10 0.721
4dwb 0M7Farnesyl pyrophosphate synthase / 0.711
2opm NI9Farnesyl pyrophosphate synthase 2.5.1.10 0.710
2o1o RISPutative farnesyl pyrophosphate synthase / 0.702
4l2x YL2Farnesyl pyrophosphate synthase 2.5.1.10 0.674
5erm 210Fusicoccadiene synthase 4.2.3.43 0.673
3s3t ATPUniversal stress protein / 0.660
3rbm B73Farnesyl pyrophosphate synthase, putative / 0.654
2e91 ZOLGeranylgeranyl pyrophosphate synthase / 0.651
4to4 DCPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.651