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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ebi BEY M1 family aminopeptidase 3.4.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ebi BEYM1 family aminopeptidase 3.4.11 1.236
3q43 D66M1 family aminopeptidase 3.4.11 0.848
3q44 D50M1 family aminopeptidase 3.4.11 0.848
2zxg S23Aminopeptidase N 3.4.11.2 0.802
2r59 PH0Leukotriene A-4 hydrolase 3.3.2.6 0.776
4xmx BESAminopeptidase N 3.4.11.2 0.768
4jbs P52Endoplasmic reticulum aminopeptidase 2 3.4.11 0.760
4k5o 1OTM1 family aminopeptidase 3.4.11 0.739
2xq0 BESLeukotriene A-4 hydrolase homolog 3.3.2.6 0.737
3fuf BESLeukotriene A-4 hydrolase 3.3.2.6 0.723
2hpt BESAminopeptidase N 3.4.11.2 0.714
2dqm BESAminopeptidase N 3.4.11.2 0.711
2yd0 BESEndoplasmic reticulum aminopeptidase 1 3.4.11 0.705
4k5p 1OSM1 family aminopeptidase 3.4.11 0.701
3fuh BESLeukotriene A-4 hydrolase 3.3.2.6 0.699
4pu2 PLUAminopeptidase N / 0.687
4q4e BB2Aminopeptidase N 3.4.11.2 0.669
3ftx BESLeukotriene A-4 hydrolase 3.3.2.6 0.665
2oc2 RX3Angiotensin-converting enzyme 3.2.1 0.652