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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3e7t B14 Nitric oxide synthase, inducible 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3e7t B14Nitric oxide synthase, inducible 1.14.13.39 0.894
3e6o A55Nitric oxide synthase, inducible 1.14.13.39 0.818
3e6t 1A2Nitric oxide synthase, inducible 1.14.13.39 0.792
3e7i B2Nitric oxide synthase, inducible 1.14.13.39 0.692
3e7g AT2Nitric oxide synthase, inducible 1.14.13.39 0.662
3e7m AT2Nitric oxide synthase, inducible 1.14.13.39 0.661
3eai 328Nitric oxide synthase, inducible 1.14.13.39 0.657