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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3e78 TPP High affinity transport system protein p37

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3e78 TPPHigh affinity transport system protein p37 / 1.027
2j6x FMNLactate oxidase / 0.668
2nli FMNLactate oxidase / 0.663
2zfa FMNLactate oxidase / 0.663
4yl2 FMNLactate oxidase / 0.662
5doz NDPJamJ / 0.655
3af1 GDPPantothenate kinase 2.7.1.33 0.651
1sxj ADPReplication factor C subunit 5 / 0.650