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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3e6t H4B Nitric oxide synthase, inducible 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3e6t H4BNitric oxide synthase, inducible 1.14.13.39 0.787
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1m8e H4BNitric oxide synthase, inducible 1.14.13.39 0.728
1m8i H4BNitric oxide synthase, inducible 1.14.13.39 0.713
1qom H4BNitric oxide synthase, inducible 1.14.13.39 0.710
3e67 H4BNitric oxide synthase, inducible 1.14.13.39 0.710
1m8d H4BNitric oxide synthase, inducible 1.14.13.39 0.708
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.708
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.702
2nod H4BNitric oxide synthase, inducible 1.14.13.39 0.697
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.691
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.690
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.690
1m9t H4BNitric oxide synthase, inducible 1.14.13.39 0.686
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.683
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.680
1m8h H4BNitric oxide synthase, inducible 1.14.13.39 0.674
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.674
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.674
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.673
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.673
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.672
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.672
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.671
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.670
3nod H4BNitric oxide synthase, inducible 1.14.13.39 0.669
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.664
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.662
4e5f 0N7Polymerase acidic protein / 0.660
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.658
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.657
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.656
4blt APCNTPase P4 / 0.656
2g6j 7APNitric oxide synthase, brain 1.14.13.39 0.655
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.655
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.655