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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3e51 N35 Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3e51 N35Genome polyprotein 2.7.7.48 1.061
3cde N3HGenome polyprotein 2.7.7.48 0.973
3co9 3MSGenome polyprotein 2.7.7.48 0.951
3h98 B5PGenome polyprotein 2.7.7.48 0.928
3cwj 321Genome polyprotein 2.7.7.48 0.876
3gyn B42Genome polyprotein 2.7.7.48 0.874
3cvk N34Genome polyprotein 2.7.7.48 0.839
3br9 DEYGenome polyprotein 2.7.7.48 0.819
2giq NN2Genome polyprotein 2.7.7.48 0.792
2fvc 888Polyprotein / 0.773
3igv B80Genome polyprotein 2.7.7.48 0.768
3h59 H59Genome polyprotein 2.7.7.48 0.752
3h2l YAKGenome polyprotein 2.7.7.48 0.749
4eaw 0NQGenome polyprotein 2.7.7.48 0.738
3bsa 1PDGenome polyprotein 2.7.7.48 0.737
3g86 T18Genome polyprotein 2.7.7.48 0.699
3h5s H5SGenome polyprotein 2.7.7.48 0.693
3h5u H5UGenome polyprotein 2.7.7.48 0.686
3u4r 08FGenome polyprotein 2.7.7.48 0.678
3d5m 4MSGenome polyprotein 2.7.7.48 0.677
3tyv HI3Genome polyprotein 2.7.7.48 0.657
3bsc 2PDGenome polyprotein 2.7.7.48 0.650