Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3e3u NVC Peptide deformylase 3.5.1.88

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3e3u NVCPeptide deformylase 3.5.1.88 0.957
1ws1 BB2Peptide deformylase 1 / 0.710
1g27 BB1Peptide deformylase 3.5.1.88 0.700
4je7 BB2Peptide deformylase 1A, chloroplastic/mitochondrial 3.5.1.88 0.691
3m6p BB2Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.672
3pn4 BB2Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.661
3u04 BB2Peptide deformylase / 0.661
3m6r BB2Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.657