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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3e2s FAD Bifunctional protein PutA 1.5.5.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3e2s FADBifunctional protein PutA 1.5.5.2 1.591
2fzm FADBifunctional protein PutA 1.5.5.2 1.360
2fzn FADBifunctional protein PutA 1.5.5.2 1.308
1tj1 FADBifunctional protein PutA 1.5.5.2 1.285
1tj2 FADBifunctional protein PutA 1.5.5.2 1.285
1tj0 FADBifunctional protein PutA 1.5.5.2 1.265
4o8a FADBifunctional protein PutA 1.2.1.88 1.255
3haz FADBifunctional protein PutA / 1.189
4nmb FADBifunctional protein PutA / 1.168
4nm9 FADBifunctional protein PutA / 1.148
4q71 FADBifunctional protein PutA / 1.103
4q73 FADBifunctional protein PutA / 1.099
4q72 FADBifunctional protein PutA / 1.092
4nmd FDABifunctional protein PutA / 1.034
4nmc FADBifunctional protein PutA / 0.857
2g37 FADProline dehydrogenase / 0.781
1wsb FMNFlavodoxin / 0.674
1b5t FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.672
1akw FMNFlavodoxin / 0.665
3gfz FMNUncharacterized protein / 0.665
1j8q FMNFlavodoxin / 0.664
4rje FNRLactate oxidase / 0.662
2jlr ANPGenome polyprotein 3.4.21.91 0.654
1lfd GNPGTPase HRas / 0.653
2mwg FMNBlue-light photoreceptor / 0.652
5dkk FMNPredicted protein / 0.651