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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dzk NMN ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dzk NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 1.053
3dzj NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.918
2o3u NGDADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.888
2i65 NADADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.874
3dzi RGTADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.834
3ghh 2NFCD38 molecule / 0.813
2hct NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.739
1isj NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2 3.2.2.6 0.733
3i9j NFDADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.715
2bwg 5GPGMP reductase 1 / 0.702
3i9j AVVADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.696
3zwo G2QADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.688
1yf3 SAHDNA adenine methylase / 0.686
3p5s AVUCD38 molecule / 0.681
3zwx AV1ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.670
4kxl 6C62'-deoxynucleoside 5'-phosphate N-hydrolase 1 / 0.663
5jqh CAUBeta-2 adrenergic receptor / 0.654
5d5b CAUBeta-2 adrenergic receptor / 0.654
4b9q ATPChaperone protein DnaK / 0.650