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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dr4 G4M GDP-perosamine synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dr4 G4MGDP-perosamine synthase / 1.628
3dr7 GPDGDP-perosamine synthase / 1.021
3b8x G4MPutative pyridoxamine 5-phosphate-dependent dehydrase / 0.767
3nub UD0UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase 2.6.1.98 0.736
2po3 T4K4-dehydrase / 0.703
4wlj IK2Kynurenine--oxoglutarate transaminase 1 2.6.1.7 0.657