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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dok GWJ Pol protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dok GWJPol protein / 1.232
3dol GWIPol protein / 0.836
3dle GFAGag-Pol polyprotein 2.7.7.49 0.803
3tam M06Gag-Pol polyprotein 2.7.7.49 0.677
3dmj GWEPol protein / 0.675
4rw4 494Gag-Pol polyprotein 2.7.7.49 0.674
3f5p 741Insulin-like growth factor 1 receptor 2.7.10.1 0.671
1nyx DRFPeroxisome proliferator-activated receptor gamma / 0.670