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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dj4 UD1 Bifunctional protein GlmU

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dj4 UD1Bifunctional protein GlmU / 1.272
4g3q UD1Bifunctional protein GlmU / 1.164
4g3p UD1Bifunctional protein GlmU / 1.163
4g3s UD1Bifunctional protein GlmU / 1.076
3spt UD1Bifunctional protein GlmU / 1.042
1hv9 UD1Bifunctional protein GlmU / 0.975
2v0i UD1Bifunctional protein GlmU / 0.930
2oi6 UD1Bifunctional protein GlmU / 0.826
1fwy UD1Bifunctional protein GlmU / 0.782
4m2a UPGUDP-glucose pyrophosphorylase / 0.761
4m2b UPGUDP-glucose pyrophosphorylase / 0.760
3gue UPGUTP-glucose-1-phosphate uridylyltransferase 2, putative / 0.719
2yqs UD1UDP-N-acetylglucosamine pyrophosphorylase 2.7.7.23 0.704
2yqj UD1UDP-N-acetylglucosamine pyrophosphorylase 2.7.7.23 0.692
1g1l DAUGlucose-1-phosphate thymidylyltransferase / 0.676
2oeg UPGUDP-glucose pyrophosphorylase / 0.669
2x5z GDDMannose-1-phosphate guanylyltransferase / 0.664