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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dh7 FMN Isopentenyl-diphosphate delta-isomerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dh7 FMNIsopentenyl-diphosphate delta-isomerase / 1.087
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.695
2zrv FNRIsopentenyl-diphosphate delta-isomerase / 0.674
2zry FNRIsopentenyl-diphosphate delta-isomerase / 0.672
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.657
2zrz FNRIsopentenyl-diphosphate delta-isomerase / 0.657
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.657
4m5p FMNNADPH dehydrogenase / 0.657
4hnb FMNLOV protein / 0.652