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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dds 26B Glycogen phosphorylase, liver form 2.4.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dds 26BGlycogen phosphorylase, liver form 2.4.1.1 1.403
3dd1 25DGlycogen phosphorylase, liver form 2.4.1.1 0.934
3ddw 055Glycogen phosphorylase, liver form 2.4.1.1 0.923
1rc1 KT3Trifunctional purine biosynthetic protein adenosine-3 2.1.2.2 0.672
1hfp MOTDihydrofolate reductase 1.5.1.3 0.666
1dfo PLGSerine hydroxymethyltransferase 2.1.2.1 0.665
1opm IYGPeptidyl-glycine alpha-amidating monooxygenase 1.14.17.3 0.657
4bqs K2QShikimate kinase 2.7.1.71 0.655
4c13 UMLUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase / 0.654
1toi HCIAspartate aminotransferase 2.6.1.1 0.652
4m42 ATPDNA-directed DNA polymerase / 0.652
3tqb FOLDihydrofolate reductase / 0.650