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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ddq RRC Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ddq RRCCyclin-dependent kinase 2 2.7.11.22 0.987
3ddp RC8Cyclin-dependent kinase 2 2.7.11.22 0.879
3dog NNNCyclin-dependent kinase 2 2.7.11.22 0.791
2a4l RRCCyclin-dependent kinase 2 2.7.11.22 0.785
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3pj8 404Cyclin-dependent kinase 2 2.7.11.22 0.742
1unl RRCCyclin-dependent-like kinase 5 2.7.11.1 0.732
1y91 CT9Cyclin-dependent kinase 2 2.7.11.22 0.714
4bgq 38RCyclin-dependent kinase-like 5 2.7.11.22 0.701
1v0p PVBCell division control protein 2 homolog 2.7.11.22 0.699
4fki 09KCyclin-dependent kinase 2 2.7.11.22 0.699
4lyn 1YGCyclin-dependent kinase 2 2.7.11.22 0.686
4fkj 11KCyclin-dependent kinase 2 2.7.11.22 0.677
2btr U73Cyclin-dependent kinase 2 2.7.11.22 0.672
2f2c AP9Cyclin-dependent kinase 6 2.7.11.22 0.669
2r3r 6SCCyclin-dependent kinase 2 2.7.11.22 0.669
3igg EFQCyclin-dependent kinase 2 2.7.11.22 0.669
2wpa 889Cyclin-dependent kinase 2 2.7.11.22 0.666
2wih P48Cyclin-dependent kinase 2 2.7.11.22 0.664
1vyw 292Cyclin-dependent kinase 2 2.7.11.22 0.663
2c6t DT5Cyclin-dependent kinase 2 2.7.11.22 0.663
4e5f 0N7Polymerase acidic protein / 0.660
4ek6 10KCyclin-dependent kinase 2 2.7.11.22 0.658
2r3m SCXCyclin-dependent kinase 2 2.7.11.22 0.657
4erk OLOMitogen-activated protein kinase 1 2.7.11.24 0.654
2cmw OLPCasein kinase I isoform gamma-1 2.7.11.1 0.653
2r3o 2SCCyclin-dependent kinase 2 2.7.11.22 0.651