sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3ddc | GNP | GTPase HRas |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3ddc | GNP | GTPase HRas | / | 1.194 | |
| 3lbh | GNP | GTPase HRas | / | 1.185 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 1.169 | |
| 2rge | GNP | GTPase HRas | / | 1.168 | |
| 3i3s | GNP | GTPase HRas | / | 1.166 | |
| 3k8y | GNP | GTPase HRas | / | 1.166 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.165 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.164 | |
| 3lbi | GNP | GTPase HRas | / | 1.160 | |
| 3rs7 | GNP | GTPase HRas | / | 1.160 | |
| 4dlv | GNP | GTPase HRas | / | 1.153 | |
| 4l9w | GNP | GTPase HRas | / | 1.150 | |
| 3oiv | GNP | GTPase HRas | / | 1.149 | |
| 4dlt | GNP | GTPase HRas | / | 1.147 | |
| 3oiw | GNP | GTPase HRas | / | 1.146 | |
| 3rs5 | GNP | GTPase HRas | / | 1.146 | |
| 3rsl | GNP | GTPase HRas | / | 1.146 | |
| 2rgc | GNP | GTPase HRas | / | 1.145 | |
| 4dlx | GNP | GTPase HRas | / | 1.144 | |
| 4g0n | GNP | GTPase HRas | / | 1.138 | |
| 4dlz | GNP | GTPase HRas | / | 1.136 | |
| 4dlw | GNP | GTPase HRas | / | 1.131 | |
| 3oiu | GNP | GTPase HRas | / | 1.123 | |
| 3v4f | GNP | GTPase HRas | / | 1.122 | |
| 5b2z | GNP | GTPase HRas | / | 1.121 | |
| 2rgb | GNP | GTPase HRas | / | 1.114 | |
| 2c5l | GTP | GTPase HRas | / | 1.110 | |
| 3l8y | GNP | GTPase HRas | / | 1.089 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.087 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.085 | |
| 4dls | GNP | GTPase HRas | / | 1.084 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.075 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.072 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.071 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.071 | |
| 4dso | GSP | GTPase KRas | / | 1.071 | |
| 4nyi | GNP | GTPase HRas | / | 1.068 | |
| 4k81 | GTP | GTPase HRas | / | 1.066 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.063 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.059 | |
| 3k9l | GNP | GTPase HRas | / | 1.050 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.048 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.046 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.037 | |
| 2rgg | GNP | GTPase HRas | / | 1.035 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.035 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 1.032 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.032 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.030 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.024 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 1.014 | |
| 3tgp | GNP | GTPase HRas | / | 1.014 | |
| 4xvq | GNP | GTPase HRas | / | 1.013 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 1.009 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 1.006 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 1.002 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.002 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.996 | |
| 3lbn | GNP | GTPase HRas | / | 0.994 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.987 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.987 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.987 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.987 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.986 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.985 | |
| 3rs0 | GNP | GTPase HRas | / | 0.983 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.982 | |
| 1kmq | GNP | Transforming protein RhoA | / | 0.978 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 0.978 | |
| 4xvr | GNP | GTPase HRas | / | 0.978 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 0.978 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 0.977 | |
| 4nyj | GNP | GTPase HRas | / | 0.972 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 0.972 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.969 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.969 | |
| 3rs4 | GNP | GTPase HRas | / | 0.968 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 0.968 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.966 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.966 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.965 | |
| 4ql3 | GDP | GTPase KRas | / | 0.965 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.963 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.963 | |
| 4mit | GTP | Rho-related protein racC | / | 0.963 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.961 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.958 | |
| 4dsn | GCP | GTPase KRas | / | 0.958 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.957 | |
| 4l9s | GDP | GTPase HRas | / | 0.955 | |
| 2ce2 | GDP | GTPase HRas | / | 0.954 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.949 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.948 | |
| 3kud | GDP | GTPase HRas | / | 0.947 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.944 | |
| 1lfd | GNP | GTPase HRas | / | 0.942 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 0.942 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.940 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.939 | |
| 4l8g | GDP | GTPase KRas | / | 0.938 | |
| 4wa7 | GDP | GTPase KRas | / | 0.936 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.934 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.931 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.930 | |
| 4q02 | GDP | GTPase KRas | / | 0.928 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.928 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.927 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.926 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.926 | |
| 4epx | GDP | GTPase KRas | / | 0.925 | |
| 2cl6 | CAG | GTPase HRas | / | 0.923 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.922 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.922 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.921 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.921 | |
| 4dsu | GDP | GTPase KRas | / | 0.914 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.914 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.913 | |
| 4tq9 | GDP | GTPase KRas | / | 0.913 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.909 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.909 | |
| 3r9x | GNP | GTPase Era | / | 0.909 | |
| 4lv6 | GDP | GTPase KRas | / | 0.908 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.906 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.905 | |
| 4epw | GDP | GTPase KRas | / | 0.899 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.897 | |
| 4ldj | GDP | GTPase KRas | / | 0.896 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.895 | |
| 4q03 | GDP | GTPase KRas | / | 0.892 | |
| 4dvg | GSP | Rho family GTPase | / | 0.890 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.889 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.887 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.887 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.887 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.885 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.884 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.884 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.881 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.881 | |
| 4obe | GDP | GTPase KRas | / | 0.880 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.878 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.877 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.874 | |
| 3ftq | GNP | Septin-2 | / | 0.874 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.873 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.871 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.871 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.868 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.866 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.866 | |
| 4lpk | GDP | GTPase KRas | / | 0.864 | |
| 3ref | GDP | Rho family GTPase | / | 0.862 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.856 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.856 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.852 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.850 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.850 | |
| 4luc | GDP | GTPase KRas | / | 0.850 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.849 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.847 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.844 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.844 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.842 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.842 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.841 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.841 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.840 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.839 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.839 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.838 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.838 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.834 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.834 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.833 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.831 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.827 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.827 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.827 | |
| 4lrw | GDP | GTPase KRas | / | 0.824 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.822 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.822 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.819 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.819 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.819 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.814 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.814 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.812 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.812 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.811 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.810 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.805 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.802 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.802 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.798 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.798 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.797 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.797 | |
| 5bn3 | ADP | NEQ263 | / | 0.797 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.796 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.795 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.794 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.794 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.791 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.791 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.791 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.791 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.789 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.787 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.786 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.786 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.786 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.786 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.785 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.785 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.784 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.783 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.783 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.782 | |
| 4db1 | ANP | Myosin-7 | / | 0.781 | |
| 1ank | ANP | Adenylate kinase | / | 0.779 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.779 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.778 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.777 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.775 | |
| 3hpq | AP5 | Adenylate kinase | / | 0.774 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.773 | |
| 4yqf | GDP | Septin-9 | / | 0.773 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.772 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.770 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.770 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.770 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.770 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.769 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.769 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.768 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.767 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.765 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.763 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.763 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.762 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.761 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.761 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.761 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.761 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.760 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.759 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.759 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.758 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.758 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.758 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.757 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.757 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.757 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.756 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.756 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.756 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.755 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.755 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.754 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.753 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.753 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.752 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.752 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.752 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.751 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.751 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.751 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.751 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.751 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.751 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.751 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.750 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.750 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.750 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.749 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.749 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.749 | |
| 4ys0 | ADP | Protein translocase subunit SecA | / | 0.749 | |
| 5cyo | GDP | Septin-9 | / | 0.749 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.749 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.748 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.747 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.747 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.746 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.745 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.745 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.743 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.743 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.742 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.742 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.742 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.741 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.740 | |
| 1xms | ANP | Protein RecA | / | 0.739 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.738 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.738 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.738 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.738 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.738 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.738 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.737 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.737 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.737 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.735 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.735 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.735 | |
| 4v02 | ATP | Site-determining protein | / | 0.735 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.734 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.734 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.734 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.734 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.732 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.732 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.732 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.731 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.731 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.730 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.729 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.729 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.728 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.728 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.728 | |
| 1xmv | ADP | Protein RecA | / | 0.727 | |
| 2zts | ADP | Uncharacterized protein | / | 0.726 | |
| 1yhn | GTP | Ras-related protein Rab-7a | / | 0.724 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.724 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.724 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.724 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.723 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.723 | |
| 2eck | ADP | Adenylate kinase | / | 0.723 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.723 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.723 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.722 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.722 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.722 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.722 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.721 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.720 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.720 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.720 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.719 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.718 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.718 | |
| 2fna | ADP | Uncharacterized protein | / | 0.718 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.717 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.717 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.717 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.717 | |
| 1ake | AP5 | Adenylate kinase | / | 0.716 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.716 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.716 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.716 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.716 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.715 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.715 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.714 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.713 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.713 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.713 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.713 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.712 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.712 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.711 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.711 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.710 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.710 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.710 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.709 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.708 | |
| 1nly | AGS | Cag alpha | / | 0.707 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.707 | |
| 2vos | ADP | Folylpolyglutamate synthase | / | 0.707 | |
| 5ftc | ADP | TPR domain protein | / | 0.707 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.706 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.706 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.706 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.705 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.705 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.704 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.704 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.704 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.703 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.703 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.700 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.700 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.699 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.699 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.698 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.698 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.698 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.698 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.697 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.697 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.696 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.696 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.696 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.695 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.694 | |
| 1zm7 | TTP | Deoxynucleoside kinase | / | 0.693 | |
| 3ea0 | ATP | ATPase, ParA family | / | 0.692 | |
| 4c2u | ANP | DNA helicase | / | 0.692 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.692 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.691 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.691 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.690 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.689 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.688 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.688 | |
| 4c30 | ANP | DNA helicase | / | 0.688 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.688 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.687 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.687 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.686 | |
| 1e0j | ANP | DNA primase/helicase | 2.7.7 | 0.685 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.685 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.684 | |
| 3ieu | GDP | GTPase Era | / | 0.684 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.684 | |
| 1oyy | AGS | ATP-dependent DNA helicase RecQ | 3.6.4.12 | 0.683 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.683 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.683 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.683 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.683 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.682 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.681 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.681 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.681 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.680 | |
| 4ike | ADP | Adenylate kinase | / | 0.680 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.679 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.678 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.677 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.676 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.676 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.676 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.676 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.674 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.674 | |
| 2zrj | AGS | Protein RecA | / | 0.674 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.674 | |
| 1g6o | ADP | Cag alpha | / | 0.672 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.672 | |
| 4iei | ADP | Gene 2 protein | / | 0.672 | |
| 2ad5 | ADP | CTP synthase | / | 0.671 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.671 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.670 | |
| 2axn | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | / | 0.670 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.670 | |
| 2zr9 | DTP | Protein RecA | / | 0.670 | |
| 3sop | GDP | Neuronal-specific septin-3 | / | 0.669 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.667 | |
| 2osb | AP5 | Adenylate kinase | / | 0.667 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.666 | |
| 1s3s | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.666 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.666 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.666 | |
| 4wpu | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.666 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.665 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.665 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.665 | |
| 4jld | ADP | Adenylate kinase | / | 0.665 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.664 | |
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.664 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.664 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.664 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.663 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.662 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.662 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.661 | |
| 2ce7 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.658 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.658 | |
| 5ftf | ADP | TPR domain protein | / | 0.658 | |
| 2npi | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.657 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.656 | |
| 2i1v | ADP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.655 | |
| 4lja | ACP | Chaperone protein ClpB | / | 0.654 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.653 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.653 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.653 | |
| 1um8 | ADP | ATP-dependent Clp protease ATP-binding subunit ClpX | / | 0.652 | |
| 1dvr | ATF | Adenylate kinase | / | 0.651 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.651 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.651 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.650 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.650 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.650 |