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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dcw EZL Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.879
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.836
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.792
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.771
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.765
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.764
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.764
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.763
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.761
4uov AZMCarbonate dehydratase / 0.760
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.759
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.758
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.757
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.756
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.755
4xiw AZMCarbonic anhydrase, alpha type / 0.753
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.752
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.751
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.751
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.750
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.749
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.749
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.747
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.746
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.743
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.742
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.742
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.741
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.739
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.738
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.734
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.732
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.732
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.731
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.730
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.730
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.728
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.727
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.724
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.723
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.722
1okn STBCarbonic anhydrase 2 4.2.1.1 0.722
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.722
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.722
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.717
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.717
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.716
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.716
1okm SABCarbonic anhydrase 2 4.2.1.1 0.716
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.713
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.713
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.713
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.711
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.711
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.710
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.710
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.710
3mho J43Carbonic anhydrase 2 4.2.1.1 0.709
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.709
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.708
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.707
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.706
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.705
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.705
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.705
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.704
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.704
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.703
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.703
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.702
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.702
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.701
4ht2 V50Carbonic anhydrase 12 4.2.1.1 0.701
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.700
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.699
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.699
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.696
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.695
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.691
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.691
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.688
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.687
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.686
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.685
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.682
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.682
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.682
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.681
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.680
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.679
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.677
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.676
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.676
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.675
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.673
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.672
2nn7 M29Carbonic anhydrase 1 4.2.1.1 0.669
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.668
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.666
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.664
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.661
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.660
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.658
3lxe TORCarbonic anhydrase 1 4.2.1.1 0.658
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.658
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.658
3myq E27Carbonic anhydrase 2 4.2.1.1 0.657
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.656
2x7t WZBCarbonic anhydrase 2 4.2.1.1 0.651
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.651