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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dbu D8W Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.857
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.834
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.758
4xiw AZMCarbonic anhydrase, alpha type / 0.758
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.757
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.755
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.753
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.750
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.749
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.748
4uov AZMCarbonate dehydratase / 0.747
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.745
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.743
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.741
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.739
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.739
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.736
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.735
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.735
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.734
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.733
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.732
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.732
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.731
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.730
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.730
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.729
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.729
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.727
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.727
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.725
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.724
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.723
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.722
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.720
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.719
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.719
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.718
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.717
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.716
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.716
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.714
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.713
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.711
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.710
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.709
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.708
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.707
1bzm MZMCarbonic anhydrase 1 4.2.1.1 0.707
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.707
1okm SABCarbonic anhydrase 2 4.2.1.1 0.707
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.707
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.706
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.705
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.705
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.704
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.703
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.702
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.701
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.701
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.699
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.698
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.698
1okn STBCarbonic anhydrase 2 4.2.1.1 0.697
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.697
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.696
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.695
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.695
3mho J43Carbonic anhydrase 2 4.2.1.1 0.694
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.690
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.689
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.687
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.687
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.686
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.686
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.685
2nn7 M29Carbonic anhydrase 1 4.2.1.1 0.682
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.680
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.679
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.678
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.677
2wd2 MS5Carbonic anhydrase 2 4.2.1.1 0.676
4ht2 V50Carbonic anhydrase 12 4.2.1.1 0.675
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.672
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.670
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.668
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.668
3oik WZBCarbonic anhydrase 2 4.2.1.1 0.666
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.665
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.665
2eu3 FF3Carbonic anhydrase 2 4.2.1.1 0.663
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.661
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.659
3oim VZ5Carbonic anhydrase 2 4.2.1.1 0.658
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.656
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.656
4pah LNRPhenylalanine-4-hydroxylase 1.14.16.1 0.656
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.655
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.655
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.653
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.653
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.653
5fl4 9FKCarbonic anhydrase 9 4.2.1.1 0.653
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.652
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.652
4kni E1ECarbonic anhydrase 2 4.2.1.1 0.652
3bet CTFCarbonic anhydrase 2 4.2.1.1 0.650
3sax E50Carbonic anhydrase 2 4.2.1.1 0.650