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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3daw ATP Actin, alpha skeletal muscle

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3daw ATPActin, alpha skeletal muscle / 1.081
1kxp ATPActin, alpha skeletal muscle / 1.020
4pkg ATPActin, alpha skeletal muscle / 1.020
4pl8 ATPActin, alpha skeletal muscle / 1.020
3m6g ATPActin, alpha skeletal muscle / 1.015
4pki ATPActin, alpha skeletal muscle / 1.012
1wua ATPActin, alpha skeletal muscle / 1.010
2q97 ATPActin, alpha skeletal muscle / 1.000
1nlv ATPMajor actin / 0.998
1qz5 ATPActin, alpha skeletal muscle / 0.991
4b1v ATPActin, alpha skeletal muscle / 0.975
3w3d ATPActin, gamma-enteric smooth muscle / 0.967
4k41 ATPActin, alpha skeletal muscle / 0.966
1s22 ATPActin, alpha skeletal muscle / 0.960
2q36 ATPActin, alpha skeletal muscle / 0.958
1c0f ATPMajor actin / 0.950
3a5o ATPMajor actin / 0.948
3eks ATPActin-5C / 0.945
5ce3 ATPActin / 0.944
3mn7 ATPActin-5C / 0.941
3mn9 ATPActin-5C / 0.941
1eqy ATPActin, alpha skeletal muscle / 0.932
1dej ATPMajor actin / 0.931
1t44 ATPActin, alpha skeletal muscle / 0.931
2a41 ATPActin, alpha skeletal muscle / 0.931
3mn6 ATPActin-5C / 0.928
2v51 ATPActin, alpha skeletal muscle / 0.920
3eku ATPActin-5C / 0.917
3chw ATPMajor actin / 0.911
1ijj ATPActin, alpha skeletal muscle / 0.908
3m1f ATPActin, alpha skeletal muscle / 0.908
2oan ATPActin, cytoplasmic 1 / 0.891
1rgi ATPActin, alpha skeletal muscle / 0.882
2p9k ATPActin-related protein 2 / 0.881
1atn ATPActin, alpha skeletal muscle / 0.874
1mdu ATPActin, alpha skeletal muscle / 0.873
3ffk ATPActin, alpha skeletal muscle / 0.872
4cbx ATPActin-2 / 0.862
3tu5 ATPActin, alpha skeletal muscle / 0.855
4pkh ADPActin, alpha skeletal muscle / 0.850
1lot ATPActin, alpha skeletal muscle / 0.846
3el2 ATPActin-5C / 0.820
4b9q ATPChaperone protein DnaK / 0.798
4k42 ADPActin, alpha skeletal muscle / 0.798
3a5m ATPMajor actin / 0.795
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.793
3wt0 ATPCell division protein FtsA / 0.792
1nm1 ATPMajor actin / 0.789
4m63 ATPActin-5C / 0.787
1h1v ATPActin, alpha skeletal muscle / 0.784
1yxq ATPActin, alpha skeletal muscle / 0.777
1nmd ATPMajor actin / 0.775
4ci6 ATPActin / 0.767
4a62 ANPPlasmid segregation protein ParM / 0.749
4a61 ANPPlasmid segregation protein ParM / 0.739
4jhd ANPActin-5C / 0.732
1rfq ATPActin, alpha skeletal muscle / 0.722
2zgz GNPPlasmid segregation protein ParM / 0.714
2d0o ADPDiol dehydratase-reactivating factor alpha subunit / 0.708
4brg GNPEctonucleoside triphosphate diphosphohydrolase I / 0.704
3ule ATPActin-related protein 2 / 0.702
3wqt ANPCell division protein FtsA / 0.699
2fsn ADPArchaeal actin homolog / 0.696
4brd ANPEctonucleoside triphosphate diphosphohydrolase I / 0.688
4k43 ADPActin, alpha skeletal muscle / 0.684
1mwm ADPPlasmid segregation protein ParM / 0.676
5bsm ATP4-coumarate--CoA ligase 2 6.2.1.12 0.675
3u4l ATPActin, cytoplasmic 1 / 0.664
5itz GTPTubulin alpha-1B chain / 0.657
1e4g ATPCell division protein FtsA / 0.654
1bmf ANPATP synthase subunit alpha, mitochondrial / 0.652
1bmf ANPATP synthase subunit beta, mitochondrial 3.6.3.14 0.652
3ryh GTPTubulin alpha chain / 0.651
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.651