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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3d90 NOG Progesterone receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3d90 NOGProgesterone receptor / 1.171
1sqn NDRProgesterone receptor / 1.008
2ab2 SNLMineralocorticoid receptor / 0.768
2ovm AS0Progesterone receptor / 0.750
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.744
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.744
2puc GUNHTH-type transcriptional repressor PurR / 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2aa7 1CAMineralocorticoid receptor / 0.731
2abi 1CAMineralocorticoid receptor / 0.730
1nhz 486Glucocorticoid receptor / 0.723
2w8y NDRProgesterone receptor / 0.718
2aa5 STRMineralocorticoid receptor / 0.710
3vhu SNLMineralocorticoid receptor / 0.709
2oax SNLMineralocorticoid receptor / 0.706
2aax PDNMineralocorticoid receptor / 0.700
1sr7 MOFProgesterone receptor / 0.687
1y9r 1CAMineralocorticoid receptor / 0.678
1ya3 STRMineralocorticoid receptor / 0.674
4a2j AS0Progesterone receptor / 0.672
2w8y 486Progesterone receptor / 0.664
3w5p 4OAVitamin D3 receptor / 0.661
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
4hqv QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
3cot STR3-oxo-5-beta-steroid 4-dehydrogenase / 0.659
3uud ESTEstrogen receptor / 0.654