sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.996 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.879 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.819 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.815 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.793 | |
| 1um8 | ADP | ATP-dependent Clp protease ATP-binding subunit ClpX | / | 0.789 | |
| 3cf0 | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.788 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.788 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.785 | |
| 2cea | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.778 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.778 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.777 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.769 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.766 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.762 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.761 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.761 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.759 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.755 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.754 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.753 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.753 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.753 | |
| 4kod | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.753 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.752 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.752 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.751 | |
| 2c96 | ATP | Psp operon transcriptional activator | / | 0.751 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.751 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.751 | |
| 1xmv | ADP | Protein RecA | / | 0.750 | |
| 2ce7 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.750 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.750 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.749 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.749 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.749 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.749 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.748 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.748 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.747 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.745 | |
| 4l8g | GDP | GTPase KRas | / | 0.745 | |
| 4obe | GDP | GTPase KRas | / | 0.745 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.744 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.744 | |
| 4lrw | GDP | GTPase KRas | / | 0.744 | |
| 4luc | GDP | GTPase KRas | / | 0.744 | |
| 3l1c | ADP | Protein claret segregational | / | 0.743 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.743 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.742 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.742 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.741 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.741 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.741 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.741 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.740 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.740 | |
| 2zro | ADP | Protein RecA | / | 0.740 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.740 | |
| 4ldj | GDP | GTPase KRas | / | 0.740 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.740 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.739 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.739 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.739 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.738 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.738 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.737 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.737 | |
| 4lpk | GDP | GTPase KRas | / | 0.737 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.736 | |
| 2fna | ADP | Uncharacterized protein | / | 0.735 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.735 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.735 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.734 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.734 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.734 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.733 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.731 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.731 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.731 | |
| 4q02 | GDP | GTPase KRas | / | 0.730 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.728 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.728 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.727 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.727 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.727 | |
| 1zio | AP5 | Adenylate kinase | / | 0.727 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.727 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.727 | |
| 3kud | GDP | GTPase HRas | / | 0.725 | |
| 2ax4 | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 | 2.7.1.25 | 0.724 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.724 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.724 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.723 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.723 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.723 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.723 | |
| 5cyo | GDP | Septin-9 | / | 0.723 | |
| 4qbh | AP5 | Adenylate kinase | / | 0.722 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.720 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.719 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.719 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.719 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.717 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.717 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.717 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.716 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.716 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.715 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.715 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.715 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.715 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.715 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.714 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.714 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.714 | |
| 1e4v | AP5 | Adenylate kinase | / | 0.713 | |
| 4mkh | AP5 | Adenylate kinase | / | 0.713 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.713 | |
| 4q03 | GDP | GTPase KRas | / | 0.713 | |
| 4xvq | GNP | GTPase HRas | / | 0.713 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.712 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.712 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.712 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.712 | |
| 4jlo | ADP | Adenylate kinase | / | 0.712 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.711 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.710 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.709 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.709 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.708 | |
| 4mkf | AP5 | Adenylate kinase | / | 0.708 | |
| 4tyq | AP5 | Adenylate kinase | / | 0.708 | |
| 3ieu | GDP | GTPase Era | / | 0.707 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 0.707 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.706 | |
| 1s3s | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.706 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.706 | |
| 1p3j | AP5 | Adenylate kinase | / | 0.705 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.705 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.705 | |
| 1im2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.703 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.703 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.703 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.703 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.703 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.702 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.702 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.702 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.701 | |
| 4cvm | ANP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.701 | |
| 4dvg | GSP | Rho family GTPase | / | 0.701 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.700 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.700 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.700 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.700 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.700 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.700 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.700 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.699 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.699 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.699 | |
| 4xvr | GNP | GTPase HRas | / | 0.699 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.698 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.698 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.697 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.697 | |
| 4ql3 | GDP | GTPase KRas | / | 0.697 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.696 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.696 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.696 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.696 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.696 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.695 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.695 | |
| 3ref | GDP | Rho family GTPase | / | 0.695 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.694 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.694 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.694 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.694 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.694 | |
| 4yqf | GDP | Septin-9 | / | 0.694 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.693 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.693 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.692 | |
| 2cl6 | CAG | GTPase HRas | / | 0.692 | |
| 4c2u | ANP | DNA helicase | / | 0.692 | |
| 4epw | GDP | GTPase KRas | / | 0.692 | |
| 4l9s | GDP | GTPase HRas | / | 0.692 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.692 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.692 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.691 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.690 | |
| 4epx | GDP | GTPase KRas | / | 0.690 | |
| 2zrj | AGS | Protein RecA | / | 0.689 | |
| 1ank | ANP | Adenylate kinase | / | 0.688 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.688 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.688 | |
| 4wa7 | GDP | GTPase KRas | / | 0.688 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.687 | |
| 1lfd | GNP | GTPase HRas | / | 0.686 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.686 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.686 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.686 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.686 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.686 | |
| 5bn4 | ANP | V-type ATP synthase alpha chain | / | 0.686 | |
| 2ce2 | GDP | GTPase HRas | / | 0.685 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.685 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.685 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.685 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.685 | |
| 1e32 | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.684 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.684 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.684 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.683 | |
| 4dsu | GDP | GTPase KRas | / | 0.683 | |
| 1njf | AGS | DNA polymerase III subunit tau | 2.7.7.7 | 0.682 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.682 | |
| 3tgp | GNP | GTPase HRas | / | 0.682 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.682 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.681 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.681 | |
| 3nbx | ADP | ATPase RavA | 3.6.3 | 0.681 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.680 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.680 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.680 | |
| 3k9l | GNP | GTPase HRas | / | 0.680 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.680 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.679 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.679 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.679 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.678 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.678 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.678 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.678 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.678 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.677 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.677 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.677 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.677 | |
| 4wpu | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.677 | |
| 3oiv | GNP | GTPase HRas | / | 0.676 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.675 | |
| 3qbv | GDP | Cell division control protein 42 homolog | / | 0.675 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 0.675 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.674 | |
| 1xkv | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.674 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 0.674 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.673 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.673 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 0.673 | |
| 2fgj | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.673 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.673 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.673 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.673 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.673 | |
| 4lv6 | GDP | GTPase KRas | / | 0.673 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.672 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.672 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.671 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.671 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.671 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.671 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.671 | |
| 4i1v | ADP | Dephospho-CoA kinase | / | 0.671 | |
| 1k6m | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 | 2.7.1.105 | 0.670 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 0.670 | |
| 4jky | ADP | Adenylate kinase | / | 0.670 | |
| 4tq9 | GDP | GTPase KRas | / | 0.670 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.669 | |
| 4qnr | ATP | Psp operon transcriptional activator | / | 0.669 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.668 | |
| 2rgg | GNP | GTPase HRas | / | 0.668 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.668 | |
| 4iei | ADP | Gene 2 protein | / | 0.668 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.667 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 0.667 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.666 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.666 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.664 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 0.664 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.664 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.664 | |
| 3ddc | GNP | GTPase HRas | / | 0.664 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.663 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.663 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.663 | |
| 4v02 | ATP | Site-determining protein | / | 0.663 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.662 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.662 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.662 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.662 | |
| 4l16 | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.662 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.661 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 0.661 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.661 | |
| 2zs9 | ADP | Pantothenate kinase | 2.7.1.33 | 0.661 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.660 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.660 | |
| 4c30 | ANP | DNA helicase | / | 0.660 | |
| 4mit | GTP | Rho-related protein racC | / | 0.660 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.659 | |
| 2rge | GNP | GTPase HRas | / | 0.659 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.659 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.658 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.658 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.658 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.657 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.656 | |
| 3ftq | GNP | Septin-2 | / | 0.656 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.656 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.656 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.656 | |
| 5c3c | ADP | CbbQ/NirQ/NorQ domain protein | / | 0.656 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.655 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.655 | |
| 4jld | ADP | Adenylate kinase | / | 0.654 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.653 | |
| 4yaf | 2AM | NADPH--cytochrome P450 reductase | / | 0.653 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.652 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.652 | |
| 1xd9 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.652 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.652 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.652 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.651 | |
| 2pc9 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.650 | |
| 3hpr | AP5 | Adenylate kinase | / | 0.650 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.650 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 0.650 | |
| 4x8l | AP5 | Adenylate kinase | / | 0.650 | |
| 4x8o | AP5 | Adenylate kinase | / | 0.650 |