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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3d7t STU Tyrosine-protein kinase CSK

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3d7t STUTyrosine-protein kinase CSK / 1.002
5e8w STUTGF-beta receptor type-1 2.7.11.30 0.737
5e8x STUTGF-beta receptor type-1 2.7.11.30 0.735
2yn8 STUEphrin type-B receptor 4 2.7.10.1 0.725
1sm2 STUTyrosine-protein kinase ITK/TSK 2.7.10.2 0.720
4c34 STUcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.708
3zew STUEphrin type-B receptor 4 2.7.10.1 0.693
1byg STUTyrosine-protein kinase CSK / 0.686
2gcd STUSerine/threonine-protein kinase TAO2 2.7.11.1 0.682
1aq1 STUCyclin-dependent kinase 2 2.7.11.22 0.680
4u9a STUInterleukin-1 receptor-associated kinase 4 2.7.11.1 0.679
3cd3 STUTyrosine-protein kinase Fes/Fps 2.7.10.2 0.673
1snu STUTyrosine-protein kinase ITK/TSK 2.7.10.2 0.667
4e5f 0N7Polymerase acidic protein / 0.660
1q3d STUGlycogen synthase kinase-3 beta 2.7.11.26 0.657
4fr4 STUSerine/threonine-protein kinase 32A 2.7.11.1 0.656