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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3d4s TIM Beta-2 adrenergic receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3d4s TIMBeta-2 adrenergic receptor / 1.101
4bvn P32Beta-1 adrenergic receptor / 0.822
2vt4 P32Beta-1 adrenergic receptor / 0.815
5a8e XTKBeta-1 adrenergic receptor / 0.809
4ldl XQCBeta-2 adrenergic receptor / 0.746
5d5a CAUBeta-2 adrenergic receptor / 0.742
2ycz I32Beta-1 adrenergic receptor / 0.738
2ycw CAUBeta-1 adrenergic receptor / 0.734
2y03 5FWBeta-1 adrenergic receptor / 0.731
3nya JTZBeta-2 adrenergic receptor / 0.729
5jqh CAUBeta-2 adrenergic receptor / 0.727
2ycy P32Beta-1 adrenergic receptor / 0.725
4ami G90Beta-1 adrenergic receptor / 0.711
5f8u P32Beta-1 adrenergic receptor / 0.692
4gbr CAUBeta-2 adrenergic receptor / 0.689
4lde P0GBeta-2 adrenergic receptor / 0.686
2y04 68HBeta-1 adrenergic receptor / 0.675
2rh1 CAUBeta-2 adrenergic receptor / 0.674
3p0g P0GBeta-2 adrenergic receptor / 0.674
5d6l CAUBeta-2 adrenergic receptor / 0.672
2y02 WHJBeta-1 adrenergic receptor / 0.670
3sn6 P0GBeta-2 adrenergic receptor / 0.670
5d5b CAUBeta-2 adrenergic receptor / 0.669
3ny9 JSZBeta-2 adrenergic receptor / 0.662
4amj CVDBeta-1 adrenergic receptor / 0.658