sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3d4b | DZD | NAD-dependent protein deacetylase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3d4b | DZD | NAD-dependent protein deacetylase | / | 1.320 | |
| 5d7q | AR6 | NAD-dependent protein deacetylase sirtuin-2 | 3.5.1 | 0.824 | |
| 4zzj | CNA | NAD-dependent protein deacetylase sirtuin-1 | 3.5.1 | 0.795 | |
| 1szc | CNA | NAD-dependent protein deacetylase HST2 | 3.5.1 | 0.761 | |
| 4bvh | AR6 | NAD-dependent protein deacetylase sirtuin-3, mitochondrial | 3.5.1 | 0.761 | |
| 5d7p | AR6 | NAD-dependent protein deacetylase sirtuin-2 | 3.5.1 | 0.758 | |
| 4bvb | AR6 | NAD-dependent protein deacetylase sirtuin-3, mitochondrial | 3.5.1 | 0.754 | |
| 2h59 | APR | NAD-dependent protein deacetylase | / | 0.744 | |
| 2h59 | 3OD | NAD-dependent protein deacetylase | / | 0.731 | |
| 5d7o | AR6 | NAD-dependent protein deacetylase sirtuin-2 | 3.5.1 | 0.717 | |
| 4g1c | CNA | NAD-dependent protein deacylase sirtuin-5, mitochondrial | / | 0.705 | |
| 1s7g | APR | NAD-dependent protein deacylase 2 | / | 0.703 | |
| 3zg6 | APR | NAD-dependent protein deacetylase sirtuin-6 | 3.5.1 | 0.700 | |
| 2b4y | APR | NAD-dependent protein deacylase sirtuin-5, mitochondrial | / | 0.693 | |
| 2qqf | A1R | NAD-dependent protein deacetylase HST2 | 3.5.1 | 0.691 | |
| 1m2g | APR | NAD-dependent protein deacylase 1 | / | 0.677 | |
| 1yc2 | APR | NAD-dependent protein deacylase 2 | / | 0.677 | |
| 1m2h | APR | NAD-dependent protein deacylase 1 | / | 0.675 | |
| 1s7g | NAD | NAD-dependent protein deacylase 2 | / | 0.673 | |
| 1yc2 | NAD | NAD-dependent protein deacylase 2 | / | 0.671 | |
| 1efp | FAD | Electron transfer flavoprotein subunit alpha | / | 0.666 | |
| 1m2k | APR | NAD-dependent protein deacylase 1 | / | 0.658 | |
| 1m2j | APR | NAD-dependent protein deacylase 1 | / | 0.652 |