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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3d28 B34 Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3d28 B34Genome polyprotein 2.7.7.48 0.907
3h5u H5UGenome polyprotein 2.7.7.48 0.763
3g86 T18Genome polyprotein 2.7.7.48 0.726
3igv B80Genome polyprotein 2.7.7.48 0.715
3d5m 4MSGenome polyprotein 2.7.7.48 0.705
3h2l YAKGenome polyprotein 2.7.7.48 0.705
3h5s H5SGenome polyprotein 2.7.7.48 0.682
3br9 DEYGenome polyprotein 2.7.7.48 0.672
3gyn B42Genome polyprotein 2.7.7.48 0.661
4eaw 0NQGenome polyprotein 2.7.7.48 0.661
3bsa 1PDGenome polyprotein 2.7.7.48 0.660
3h59 H59Genome polyprotein 2.7.7.48 0.651