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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3d27 W29 Methionine aminopeptidase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3d27 W29Methionine aminopeptidase / 0.816
1nmd ATPMajor actin / 0.744
1wet GUNHTH-type transcriptional repressor PurR / 0.744
2d09 FLVBiflaviolin synthase CYP158A2 / 0.744
2jey HLOAcetylcholinesterase 3.1.1.7 0.744
3f8p NADNADH oxidase/thioredoxin reductase / 0.744
3f8r NAPNADH oxidase/thioredoxin reductase / 0.744
3fzf ATPHeat shock cognate 71 kDa protein / 0.744
3zzn ADPL-lactate dehydrogenase / 0.744
5bnt NAPAspartate-semialdehyde dehydrogenase 1.2.1.11 0.744
2evc FC3Methionine aminopeptidase / 0.674
1h48 C5P2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.660
2hs4 ACPPhosphoribosylformylglycinamidine synthase subunit PurL / 0.660
2puf GUNHTH-type transcriptional repressor PurR / 0.660
4cdg ADPBloom syndrome protein 3.6.4.12 0.660
4nxv GDPMitochondrial dynamics protein MID51 / 0.660
4flj Y08Methionine aminopeptidase 1 / 0.659
3pkd Y10Methionine aminopeptidase 2 / 0.658
3pka Y02Methionine aminopeptidase 2 / 0.650