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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3d0b SNX Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3d0b SNXHeat shock protein HSP 90-alpha / 1.212
3q5k D1UHeat shock protein 83-1 / 0.792
4awo 99BHeat shock protein HSP 90-alpha / 0.766
3opd HIEHeat shock protein 83 / 0.710
2esa GDMEndoplasmin / 0.676
3inx JZCHeat shock protein HSP 90-alpha / 0.674
4awp 99AHeat shock protein HSP 90-alpha / 0.674
3rlp 3RPHeat shock protein HSP 90-alpha / 0.670
3ft8 MOJHeat shock protein HSP 90-alpha / 0.667
1uyf PU1Heat shock protein HSP 90-alpha / 0.654
3o6o 94MHeat shock protein 83 / 0.651