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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cvk N34 Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3cvk N34Genome polyprotein 2.7.7.48 1.131
3e51 N35Genome polyprotein 2.7.7.48 0.839
3h2l YAKGenome polyprotein 2.7.7.48 0.828
3h98 B5PGenome polyprotein 2.7.7.48 0.822
4eaw 0NQGenome polyprotein 2.7.7.48 0.816
3cde N3HGenome polyprotein 2.7.7.48 0.810
3gyn B42Genome polyprotein 2.7.7.48 0.810
3g86 T18Genome polyprotein 2.7.7.48 0.768
3h59 H59Genome polyprotein 2.7.7.48 0.748
3h5s H5SGenome polyprotein 2.7.7.48 0.747
3d5m 4MSGenome polyprotein 2.7.7.48 0.744
3igv B80Genome polyprotein 2.7.7.48 0.731
3bsa 1PDGenome polyprotein 2.7.7.48 0.725
2giq NN2Genome polyprotein 2.7.7.48 0.720
3cwj 321Genome polyprotein 2.7.7.48 0.713
3u4r 08FGenome polyprotein 2.7.7.48 0.711
3br9 DEYGenome polyprotein 2.7.7.48 0.699
3co9 3MSGenome polyprotein 2.7.7.48 0.690
4mk8 28QGenome polyprotein 2.7.7.48 0.681
4mka 2AYGenome polyprotein 2.7.7.48 0.680
4mkb 28VGenome polyprotein 2.7.7.48 0.659
3h5u H5UGenome polyprotein 2.7.7.48 0.658