scPDB - Distribution of Binding mode Similarity values of 3cp9 entry / Site 1

Distribution of Interaction pattern similarity measured by Grim

You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3cp9	C19	Vascular endothelial growth factor receptor 2	2.7.10.1

Complex with similar interaction patterns:

PDB ID	HET	Uniprot Name	EC Number	Binding Mode Similarity
3cp9	C19	Vascular endothelial growth factor receptor 2	2.7.10.1	1.099
3efl	706	Vascular endothelial growth factor receptor 2	2.7.10.1	0.719
2p2i	608	Vascular endothelial growth factor receptor 2	2.7.10.1	0.706
3hng	8ST	Vascular endothelial growth factor receptor 1	2.7.10.1	0.667