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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3clt FAD Electron transfer flavoprotein subunit alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3clt FADElectron transfer flavoprotein subunit alpha / 1.484
3cls FADElectron transfer flavoprotein subunit alpha / 1.402
3clr FADElectron transfer flavoprotein subunit alpha / 1.373
3clu FADElectron transfer flavoprotein subunit alpha / 1.331
1o97 FADElectron transfer flavoprotein subunit alpha / 1.232
1efv FADElectron transfer flavoprotein subunit alpha, mitochondrial / 1.162
2a1u FADElectron transfer flavoprotein subunit alpha, mitochondrial / 1.153
1efp FADElectron transfer flavoprotein subunit alpha / 1.110
4d5g FADCyclohexane-1,2-dione hydrolase 3.7.1.11 0.725
2z6c FMNPhototropin-1 2.7.11.1 0.710
5j4e FMNSensory box protein / 0.708
1jsc FADAcetolactate synthase catalytic subunit, mitochondrial 2.2.1.6 0.707
4eeu FMNPhototropin-2 2.7.11.1 0.705
2c31 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.700
4kuo RBFPutative blue-light photoreceptor / 0.699
5j3w FMNSensory box protein / 0.698
3e9y FABAcetolactate synthase, chloroplastic 2.2.1.6 0.695
4yus FMNFamily 3 adenylate cyclase / 0.694
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.690
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.688
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.686
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.686
3aeb FADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial / 0.685
2ji9 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.683
3zg6 APRNAD-dependent protein deacetylase sirtuin-6 3.5.1 0.683
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.675
2gj3 FADNitrogen fixation regulatory protein 2.7.13.3 0.671
3gg0 FMNUncharacterized protein / 0.671
4hhd FMNPhototropin-1 2.7.11.1 0.671
4yac NAIC alpha-dehydrogenase / 0.670
2byc FMNBlue-light receptor of the BLUF-family / 0.669
3lsh FADPyranose 2-oxidase / 0.668
1t6y FMNRiboflavin biosynthesis protein / 0.667
1kyv RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.660
4qai FMNNADPH dehydrogenase / 0.660
4nec SAHPutative SAM-dependent methyltransferase / 0.659
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.657
2q28 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.657
2wzv FMNNitroreductase NfnB / 0.657
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.655
2pr5 FMNBlue-light photoreceptor / 0.655
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.654
2pd7 FADVivid PAS protein VVD / 0.654
4fk8 FADFerredoxin--NADP reductase / 0.654
1nm5 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.652
2gv8 FADThiol-specific monooxygenase 1.14.13 0.651
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.651
1amo FADNADPH--cytochrome P450 reductase / 0.650