Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cem AVD Glycogen phosphorylase, liver form 2.4.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
3cem AVDGlycogen phosphorylase, liver form 2.4.1.1 1.294
3ceh AVEGlycogen phosphorylase, liver form 2.4.1.1 0.696
3oct 1N1Tyrosine-protein kinase BTK 2.7.10.2 0.661
3b2w 9NHTyrosine-protein kinase Lck 2.7.10.2 0.658
3icr COACoenzyme A disulfide reductase / 0.656
3lfa 1N1Mitogen-activated protein kinase 14 / 0.650