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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cde N3H Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3cde N3HGenome polyprotein 2.7.7.48 1.062
3h98 B5PGenome polyprotein 2.7.7.48 0.976
3e51 N35Genome polyprotein 2.7.7.48 0.973
3gyn B42Genome polyprotein 2.7.7.48 0.940
3co9 3MSGenome polyprotein 2.7.7.48 0.937
3cwj 321Genome polyprotein 2.7.7.48 0.931
3br9 DEYGenome polyprotein 2.7.7.48 0.834
3cvk N34Genome polyprotein 2.7.7.48 0.810
3h59 H59Genome polyprotein 2.7.7.48 0.803
3g86 T18Genome polyprotein 2.7.7.48 0.795
2giq NN2Genome polyprotein 2.7.7.48 0.767
3h2l YAKGenome polyprotein 2.7.7.48 0.766
4eaw 0NQGenome polyprotein 2.7.7.48 0.753
4mkb 28VGenome polyprotein 2.7.7.48 0.752
3igv B80Genome polyprotein 2.7.7.48 0.739
2fvc 888Polyprotein / 0.733
3h5u H5UGenome polyprotein 2.7.7.48 0.703
3h5s H5SGenome polyprotein 2.7.7.48 0.690
3bsa 1PDGenome polyprotein 2.7.7.48 0.689
3d5m 4MSGenome polyprotein 2.7.7.48 0.686
4mka 2AYGenome polyprotein 2.7.7.48 0.679
4mk8 28QGenome polyprotein 2.7.7.48 0.655