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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3c8b ARG_ARG_GLY_ILE_NH2 Botulinum neurotoxin type A 3.4.24.69

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3c8b ARG_ARG_GLY_ILE_NH2Botulinum neurotoxin type A 3.4.24.69 1.154
3c8a ARG_ARG_GLY_LEU_NH2Botulinum neurotoxin type A 3.4.24.69 0.861
3c89 ARG_ARG_GLY_MET_NH2Botulinum neurotoxin type A 3.4.24.69 0.797
3qw8 CYS_ARG_GLY_CYS_NH2Botulinum neurotoxin type A 3.4.24.69 0.668