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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3c49 KU8 Poly [ADP-ribose] polymerase 3 2.4.2.30

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3c49 KU8Poly [ADP-ribose] polymerase 3 2.4.2.30 0.931
5ds3 09LPoly [ADP-ribose] polymerase 1 2.4.2.30 0.795
4avu LDRTankyrase-2 2.4.2.30 0.725
4tvj 09LPoly [ADP-ribose] polymerase 2 2.4.2.30 0.719
2rd6 78PPoly [ADP-ribose] polymerase 1 2.4.2.30 0.716
4avw G18Tankyrase-2 2.4.2.30 0.715
4bux F35Tankyrase-2 2.4.2.30 0.713
4buv 16ITankyrase-2 2.4.2.30 0.711
4bu9 08CTankyrase-2 2.4.2.30 0.709
4mt9 2D6Tankyrase-1 2.4.2.30 0.702
3gn7 3GNPoly [ADP-ribose] polymerase 1 2.4.2.30 0.701
3l3l L3LPoly [ADP-ribose] polymerase 1 2.4.2.30 0.701
4gv2 5MEPoly [ADP-ribose] polymerase 3 2.4.2.30 0.701
4hhz 15SPoly [ADP-ribose] polymerase 1 2.4.2.30 0.700
4buu F38Tankyrase-2 2.4.2.30 0.697
1uk1 FRQPoly [ADP-ribose] polymerase 1 2.4.2.30 0.694
4bue JQFTankyrase-2 2.4.2.30 0.694
4buf F36Tankyrase-2 2.4.2.30 0.694
4bus 32FTankyrase-2 2.4.2.30 0.694
4r5w XAVPoly [ADP-ribose] polymerase 1 2.4.2.30 0.693
4bud 29FTankyrase-2 2.4.2.30 0.691
4tjy 3GNTankyrase-2 2.4.2.30 0.691
4gv7 MEWPoly [ADP-ribose] polymerase 1 2.4.2.30 0.690
3kr8 XAVTankyrase-2 2.4.2.30 0.687
3l3m A92Poly [ADP-ribose] polymerase 1 2.4.2.30 0.684
3u9y 09LTankyrase-2 2.4.2.30 0.683
4pnm NU1Tankyrase-2 2.4.2.30 0.682
4buw F33Tankyrase-2 2.4.2.30 0.681
5dsy UHBPoly [ADP-ribose] polymerase 2 2.4.2.30 0.681
4but 31FTankyrase-2 2.4.2.30 0.678
4msg 2C6Tankyrase-1 2.4.2.30 0.678
4hlm 16STankyrase-2 2.4.2.30 0.675
4hki FLNTankyrase-2 2.4.2.30 0.674
4hlf 15ZTankyrase-2 2.4.2.30 0.674
4l34 1VGTankyrase-2 2.4.2.30 0.674
4l0s 1UZTankyrase-2 2.4.2.30 0.672
4l0v 1V1Tankyrase-2 2.4.2.30 0.672
4l0t 1V0Tankyrase-2 2.4.2.30 0.671
1pax DHQPoly [ADP-ribose] polymerase 1 2.4.2.30 0.670
4li6 1XOTankyrase-1 2.4.2.30 0.668
4f1q 0RZPoly [ADP-ribose] polymerase 14 2.4.2.30 0.666
4bui W2ETankyrase-2 2.4.2.30 0.662
5aku 29FTankyrase-2 2.4.2.30 0.661
2rcw AAIPoly [ADP-ribose] polymerase 1 2.4.2.30 0.660
4l32 1VFTankyrase-2 2.4.2.30 0.658
4l10 A63Tankyrase-2 2.4.2.30 0.657
4l2f 1V3Tankyrase-2 2.4.2.30 0.656
4l31 F08Tankyrase-2 2.4.2.30 0.654
4l33 F70Tankyrase-2 2.4.2.30 0.653
3b78 NADExotoxin A 2.4.2.36 0.650