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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3c36 KAI Glutamate receptor ionotropic, kainate 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3c36 KAIGlutamate receptor ionotropic, kainate 1 / 1.046
3c34 KAIGlutamate receptor ionotropic, kainate 1 / 0.987
3c35 KAIGlutamate receptor ionotropic, kainate 1 / 0.980
4bdr KAIGlutamate receptor ionotropic, kainate 2 / 0.958
2pbw DOQGlutamate receptor ionotropic, kainate 1 / 0.933
2xxv KAIGlutamate receptor ionotropic, kainate 2 / 0.918
1lbb KAIGlutamate receptor 2 / 0.917
1fw0 KAIGlutamate receptor 2 / 0.914
3kfm KAIGlutamate receptor 4 / 0.912
4f3g KAIGlutamate receptor 3 / 0.912
4f31 KAIGlutamate receptor 3 / 0.902
2xxy KAIGlutamate receptor ionotropic, kainate 2 / 0.838
4bdo KAIGlutamate receptor ionotropic, kainate 2 / 0.799
4dld TZGGlutamate receptor ionotropic, kainate 1 / 0.787
3rt8 CWDGlutamate receptor 3 / 0.728
3tza TZGGlutamate receptor 2 / 0.710
4h8i 11WGlutamate receptor ionotropic, kainate 2 / 0.701
1vso AT1Glutamate receptor ionotropic, kainate 1 / 0.688
3s2v 3HUGlutamate receptor ionotropic, kainate 1 / 0.684
2yqz SAMUncharacterized protein / 0.683
3sxj SAMPutative methyltransferase / 0.683
3fri SAH16S rRNA methylase / 0.680
5bp9 SAHPutative methyltransferase protein / 0.673
4kdr SAHUbiquinone biosynthesis O-methyltransferase / 0.672
3lcu SAH16S rRNA (guanine(1405)-N(7))-methyltransferase 2.1.1.179 0.667
2wky IBCGlutamate receptor ionotropic, kainate 1 / 0.666
3h03 UBPGlutamate receptor 2 / 0.662
3t0i SAHPutative methyltransferase / 0.662
3vp6 HLDGlutamate decarboxylase 1 4.1.1.15 0.662
3t7t SAHUncharacterized protein / 0.661
5e8j SAHmRNA cap guanine-N7 methyltransferase 2.1.1.56 0.657
3iei SAHLeucine carboxyl methyltransferase 1 2.1.1.233 0.656
3kkz SAMUncharacterized protein / 0.656
3t7s SAMUncharacterized protein / 0.656
2qs1 UB1Glutamate receptor ionotropic, kainate 1 / 0.651
4gxs 0YSGlutamate receptor 2 / 0.651