sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3c35 | KAI | Glutamate receptor ionotropic, kainate 1 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3c35 | KAI | Glutamate receptor ionotropic, kainate 1 | / | 1.015 | |
| 3c36 | KAI | Glutamate receptor ionotropic, kainate 1 | / | 0.980 | |
| 3c34 | KAI | Glutamate receptor ionotropic, kainate 1 | / | 0.976 | |
| 4bdr | KAI | Glutamate receptor ionotropic, kainate 2 | / | 0.974 | |
| 1fw0 | KAI | Glutamate receptor 2 | / | 0.949 | |
| 1lbb | KAI | Glutamate receptor 2 | / | 0.942 | |
| 2pbw | DOQ | Glutamate receptor ionotropic, kainate 1 | / | 0.931 | |
| 2xxv | KAI | Glutamate receptor ionotropic, kainate 2 | / | 0.919 | |
| 3kfm | KAI | Glutamate receptor 4 | / | 0.914 | |
| 4f3g | KAI | Glutamate receptor 3 | / | 0.910 | |
| 4f31 | KAI | Glutamate receptor 3 | / | 0.902 | |
| 4bdo | KAI | Glutamate receptor ionotropic, kainate 2 | / | 0.876 | |
| 2xxy | KAI | Glutamate receptor ionotropic, kainate 2 | / | 0.845 | |
| 4dld | TZG | Glutamate receptor ionotropic, kainate 1 | / | 0.784 | |
| 2wky | IBC | Glutamate receptor ionotropic, kainate 1 | / | 0.705 | |
| 3h03 | UBP | Glutamate receptor 2 | / | 0.702 | |
| 3s2v | 3HU | Glutamate receptor ionotropic, kainate 1 | / | 0.698 | |
| 4h8i | 11W | Glutamate receptor ionotropic, kainate 2 | / | 0.697 | |
| 1vso | AT1 | Glutamate receptor ionotropic, kainate 1 | / | 0.694 | |
| 3vp6 | HLD | Glutamate decarboxylase 1 | 4.1.1.15 | 0.670 | |
| 3fri | SAH | 16S rRNA methylase | / | 0.661 | |
| 5bp9 | SAH | Putative methyltransferase protein | / | 0.658 | |
| 5e8j | SAH | mRNA cap guanine-N7 methyltransferase | 2.1.1.56 | 0.658 | |
| 4kdr | SAH | Ubiquinone biosynthesis O-methyltransferase | / | 0.653 | |
| 3tza | TZG | Glutamate receptor 2 | / | 0.652 | |
| 1kia | SAM | Glycine N-methyltransferase | 2.1.1.20 | 0.650 | |
| 3n8z | FLP | Prostaglandin G/H synthase 1 | 1.14.99.1 | 0.650 | |
| 3rt8 | CWD | Glutamate receptor 3 | / | 0.650 |