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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3c1m ANP Probable aspartokinase 2.7.2.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3c1m ANPProbable aspartokinase 2.7.2.4 1.147
4jz7 ANPCarbamate kinase / 0.774
3ll9 ADPIsopentenyl phosphate kinase / 0.725
2aru ATPLipoate-protein ligase A subunit 1 / 0.660
3fst FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.650
4mit GTPRho-related protein racC / 0.650