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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3c13 EMO Casein kinase II subunit alpha 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3c13 EMOCasein kinase II subunit alpha 2.7.11.1 0.988
3bqc EMOCasein kinase II subunit alpha 2.7.11.1 0.908
3q9x EMOCasein kinase II subunit alpha 2.7.11.1 0.906
3q9w EMOCasein kinase II subunit alpha 2.7.11.1 0.900
3q9z TXQCasein kinase II subunit alpha 2.7.11.1 0.788
3q9y TXQCasein kinase II subunit alpha 2.7.11.1 0.770
1f0q EMOCasein kinase II subunit alpha 2.7.11.1 0.762
4dgm AGICasein kinase II subunit alpha 2.7.11.1 0.761
1m2p HNACasein kinase II subunit alpha 2.7.11.1 0.727
3gki CLRNiemann-Pick C1 protein / 0.666
4mf0 29ZTyrosine-protein kinase ITK/TSK 2.7.10.2 0.662
4b7p 9UNHeat shock protein HSP 90-alpha / 0.658
3fzs B96Protein-tyrosine kinase 2-beta 2.7.10.2 0.654