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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3bsa 1PD Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3bsa 1PDGenome polyprotein 2.7.7.48 1.041
2fvc 888Polyprotein / 0.771
3co9 3MSGenome polyprotein 2.7.7.48 0.745
3e51 N35Genome polyprotein 2.7.7.48 0.737
3gyn B42Genome polyprotein 2.7.7.48 0.735
2giq NN2Genome polyprotein 2.7.7.48 0.726
3cvk N34Genome polyprotein 2.7.7.48 0.725
3br9 DEYGenome polyprotein 2.7.7.48 0.718
3cwj 321Genome polyprotein 2.7.7.48 0.717
3h2l YAKGenome polyprotein 2.7.7.48 0.697
3cde N3HGenome polyprotein 2.7.7.48 0.689
3tyv HI3Genome polyprotein 2.7.7.48 0.687
4eaw 0NQGenome polyprotein 2.7.7.48 0.684
3bsc 2PDGenome polyprotein 2.7.7.48 0.677
3h59 H59Genome polyprotein 2.7.7.48 0.664
3d28 B34Genome polyprotein 2.7.7.48 0.660
2qe2 452Polyprotein / 0.650
3g86 T18Genome polyprotein 2.7.7.48 0.650