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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3br9 DEY Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3br9 DEYGenome polyprotein 2.7.7.48 1.037
3cwj 321Genome polyprotein 2.7.7.48 0.903
3cde N3HGenome polyprotein 2.7.7.48 0.834
3h98 B5PGenome polyprotein 2.7.7.48 0.826
3e51 N35Genome polyprotein 2.7.7.48 0.819
3g86 T18Genome polyprotein 2.7.7.48 0.729
3co9 3MSGenome polyprotein 2.7.7.48 0.728
2fvc 888Polyprotein / 0.720
3bsa 1PDGenome polyprotein 2.7.7.48 0.718
3bsc 2PDGenome polyprotein 2.7.7.48 0.700
3cvk N34Genome polyprotein 2.7.7.48 0.699
3gyn B42Genome polyprotein 2.7.7.48 0.699
3d28 B34Genome polyprotein 2.7.7.48 0.672
3igv B80Genome polyprotein 2.7.7.48 0.656