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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3blq ATP Cyclin-dependent kinase 9 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3blq ATPCyclin-dependent kinase 9 2.7.11.22 0.818
3b2t M33Fibroblast growth factor receptor 2 / 0.720
4cki ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.702
4ckj ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.701
1ztf XYARIO-type serine/threonine-protein kinase Rio1 2.7.11.1 0.694
4c2w ANPAurora kinase B-A 2.7.11.1 0.691
2qo9 ANPEphrin type-A receptor 3 2.7.10.1 0.689
4uya AGSMitogen-activated protein kinase kinase kinase 21 2.7.11.25 0.687
4gt3 ATPMitogen-activated protein kinase 1 2.7.11.24 0.685
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.681
4xhg ADPUncharacterized protein / 0.677
4fic 0ULProto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.674
2yeg XQGHeat shock protein HSP 90-alpha / 0.672
3mvj XFEcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.671
4dca ADPAminoglycoside phosphotransferase / 0.670
1jpa ANPEphrin type-B receptor 2 2.7.10.1 0.668
4w9w YDJBMP-2-inducible protein kinase 2.7.11.1 0.668
1zy5 ANPeIF-2-alpha kinase GCN2 / 0.667
3ac2 KSETyrosine-protein kinase Lck 2.7.10.2 0.666
3kn5 ANPRibosomal protein S6 kinase alpha-5 2.7.11.1 0.666
3zo1 SIJcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.666
2qoq ANPEphrin type-A receptor 3 2.7.10.1 0.665
2uvy GVIcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.663
4hvh 19RTyrosine-protein kinase JAK3 2.7.10.2 0.663
3vjo ANPEpidermal growth factor receptor 2.7.10.1 0.662
1c3x 8IGPurine nucleoside phosphorylase 2.4.2.1 0.661
2pmo HMDProtein kinase 7 / 0.661
3x2u ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.661
1oiy N41Cyclin-dependent kinase 2 2.7.11.22 0.660
2pvy ACPFibroblast growth factor receptor 2 / 0.660
2itn ANPEpidermal growth factor receptor 2.7.10.1 0.659
2itv ANPEpidermal growth factor receptor 2.7.10.1 0.659
3mv5 XFERAC-alpha serine/threonine-protein kinase 2.7.11.1 0.659
4egi B2JHeat shock protein HSP 90-alpha / 0.659
4gu9 4GUFocal adhesion kinase 1 2.7.10.2 0.659
1zp9 ATPRIO-type serine/threonine-protein kinase Rio1 2.7.11.1 0.658
2whq HI6Acetylcholinesterase 3.1.1.7 0.658
4btm F8ETau-tubulin kinase 1 2.7.11.1 0.658
5cu6 ATPCasein kinase II subunit alpha 2.7.11.1 0.658
2gs7 ANPEpidermal growth factor receptor 2.7.10.1 0.656
2pzr ACPFibroblast growth factor receptor 2 / 0.656
2ydj YDJSerine/threonine-protein kinase Chk1 2.7.11.1 0.656
2wmu ZYUSerine/threonine-protein kinase Chk1 2.7.11.1 0.655
3a7h ATPSerine/threonine-protein kinase 24 2.7.11.1 0.655
3ac1 KZITyrosine-protein kinase Lck 2.7.10.2 0.655
3zc6 VFCTyrosine-protein kinase JAK3 2.7.10.2 0.655
1e1x NW1Cyclin-dependent kinase 2 2.7.11.22 0.654
1fq1 ATPCyclin-dependent kinase 2 2.7.11.22 0.654
4oti MI1Serine/threonine-protein kinase N1 / 0.654
4s34 ANPMitogen-activated protein kinase 1 2.7.11.24 0.654
2uvz GVJcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652
2duv 371Cyclin-dependent kinase 2 2.7.11.22 0.651
3lxk MI1Tyrosine-protein kinase JAK3 2.7.10.2 0.650
4hvi 19STyrosine-protein kinase JAK3 2.7.10.2 0.650