Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3blo QEI Queuine tRNA-ribosyltransferase 2.4.2.29

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3blo QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.775
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3w6h AZMCarbonic anhydrase 1 4.2.1.1 0.684
4blt APCNTPase P4 / 0.665
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.661
4e5f 0N7Polymerase acidic protein / 0.660
1ozq PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.656
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.655
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.650