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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3biy 01K Histone acetyltransferase p300

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3biy 01KHistone acetyltransferase p300 / 1.534
4bhw 01KHistone acetyltransferase p300 / 1.122
4pzs ACOHistone acetyltransferase p300 / 1.081
4pzt SOPHistone acetyltransferase p300 / 1.056
4pzr COAHistone acetyltransferase p300 / 1.040
1kuy COTSerotonin N-acetyltransferase / 0.695
1kuv CA5Serotonin N-acetyltransferase / 0.676
1l0c COTSerotonin N-acetyltransferase / 0.676
1v0c ACOAAC(6')-Ib / 0.657
1cjw COTSerotonin N-acetyltransferase / 0.651