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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3bhe BZN Gag-Pol polyprotein 3.4.23.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3bhe BZNGag-Pol polyprotein 3.4.23.16 1.135
2r43 G3GGag-Pol polyprotein 3.4.23.16 0.734
2r3t G4GGag-Pol polyprotein 3.4.23.16 0.731
2r3w G3GGag-Pol polyprotein 3.4.23.16 0.713
2r38 G4GGag-Pol polyprotein 3.4.23.16 0.699
2pwc G3GGag-Pol polyprotein 3.4.23.16 0.681
1odx 0E8Gag-Pol polyprotein 3.4.23.16 0.678
3qbf JHGGag-Pol polyprotein 3.4.23.16 0.677
2pqz G0GGag-Pol polyprotein 3.4.23.16 0.671
4y38 0A9Endothiapepsin 3.4.23.22 0.666
1mtr PI6Gag-Pol polyprotein 3.4.23.16 0.662
1xl2 189Gag-Pol polyprotein 3.4.23.16 0.660
3vyf VYFRenin 3.4.23.15 0.660