sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3bgi | SAH | Thiopurine S-methyltransferase | 2.1.1.67 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3bgi | SAH | Thiopurine S-methyltransferase | 2.1.1.67 | 1.052 | |
| 2bzg | SAH | Thiopurine S-methyltransferase | 2.1.1.67 | 0.959 | |
| 3v97 | SAH | Ribosomal RNA large subunit methyltransferase K/L | 2.1.1.173 | 0.804 | |
| 1yf3 | SAH | DNA adenine methylase | / | 0.774 | |
| 5fa5 | MTA | Protein arginine N-methyltransferase 5 | / | 0.772 | |
| 3grr | SAH | Probable ribosomal RNA small subunit methyltransferase A | / | 0.771 | |
| 4gbe | SAH | DNA adenine methylase | 2.1.1.72 | 0.754 | |
| 5ccb | SAH | tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A | 2.1.1.220 | 0.754 | |
| 2qe6 | SAM | Uncharacterized protein | / | 0.753 | |
| 2g1p | SAH | DNA adenine methylase | 2.1.1.72 | 0.751 | |
| 2gs9 | SAH | Uncharacterized protein | / | 0.747 | |
| 2ore | SAH | DNA adenine methylase | 2.1.1.72 | 0.746 | |
| 4azw | SAM | O-antigen chain terminator bifunctional methyltransferase/kinase WbdD | / | 0.746 | |
| 3mte | SAM | 16S rRNA (adenine(1408)-N(1))-methyltransferase | 2.1.1.180 | 0.745 | |
| 1y9d | FAD | Pyruvate oxidase | 1.2.3.3 | 0.741 | |
| 4rtk | SAH | DNA adenine methylase | 2.1.1.72 | 0.741 | |
| 5dxa | SFG | Histone-arginine methyltransferase CARM1 | / | 0.741 | |
| 2ji9 | ADP | Oxalyl-CoA decarboxylase | 4.1.1.8 | 0.738 | |
| 4nec | SAH | Putative SAM-dependent methyltransferase | / | 0.738 | |
| 5je2 | SAH | Methyl transferase | / | 0.735 | |
| 3egv | SAH | Ribosomal protein L11 methyltransferase | 2.1.1 | 0.732 | |
| 4ymg | SAM | Putative SAM-dependent O-methyltranferase | / | 0.732 | |
| 2o07 | MTA | Spermidine synthase | 2.5.1.16 | 0.728 | |
| 2q28 | ADP | Oxalyl-CoA decarboxylase | 4.1.1.8 | 0.728 | |
| 3lcc | SAH | Thiocyanate methyltransferase 1 | / | 0.728 | |
| 4rts | SAM | DNA adenine methylase | 2.1.1.72 | 0.727 | |
| 2dpm | SAM | Modification methylase DpnIIA | 2.1.1.72 | 0.726 | |
| 2zth | SAM | Catechol O-methyltransferase | 2.1.1.6 | 0.726 | |
| 3cjt | SAH | Ribosomal protein L11 methyltransferase | 2.1.1 | 0.726 | |
| 3u81 | SAH | Catechol O-methyltransferase | 2.1.1.6 | 0.726 | |
| 4fzv | SAM | 5-methylcytosine rRNA methyltransferase NSUN4 | 2.1.1 | 0.726 | |
| 4pyn | SAH | Catechol O-methyltransferase | 2.1.1.6 | 0.726 | |
| 1yqz | FAD | Coenzyme A disulfide reductase | / | 0.725 | |
| 2yx1 | SFG | tRNA (guanine(37)-N1)-methyltransferase Trm5b | 2.1.1.228 | 0.725 | |
| 1g60 | SAM | Modification methylase MboII | 2.1.1.72 | 0.724 | |
| 1p1c | SAH | Guanidinoacetate N-methyltransferase | 2.1.1.2 | 0.723 | |
| 1boo | SAH | Modification methylase PvuII | 2.1.1.113 | 0.722 | |
| 4uy6 | SAH | Histidine N-alpha-methyltransferase | / | 0.722 | |
| 5ccx | SAH | tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A | 2.1.1.220 | 0.722 | |
| 1eg2 | MTA | Modification methylase RsrI | 2.1.1.72 | 0.720 | |
| 2jib | ADP | Oxalyl-CoA decarboxylase | 4.1.1.8 | 0.720 | |
| 3duw | SAH | O-methyltransferase, putative | / | 0.720 | |
| 5dx1 | SFG | Histone-arginine methyltransferase CARM1 | / | 0.720 | |
| 3mht | SAH | Modification methylase HhaI | 2.1.1.37 | 0.717 | |
| 3fpf | MTA | Uncharacterized protein | / | 0.716 | |
| 4gqb | 0XU | Protein arginine N-methyltransferase 5 | / | 0.716 | |
| 4pyo | SAH | Catechol O-methyltransferase | 2.1.1.6 | 0.716 | |
| 3iv6 | SAM | Uncharacterized protein | / | 0.715 | |
| 3rw9 | DSH | Spermidine synthase | 2.5.1.16 | 0.715 | |
| 3tm4 | SAM | Uncharacterized protein | / | 0.715 | |
| 4lwp | SAH | Arginine N-methyltransferase, putative | / | 0.715 | |
| 5i39 | FAD | L-amino acid deaminase | / | 0.715 | |
| 5dxj | SFG | Histone-arginine methyltransferase CARM1 | / | 0.714 | |
| 3tsc | NAD | Uncharacterized protein | / | 0.711 | |
| 3lby | SAH | Uncharacterized protein | / | 0.710 | |
| 3b3f | SAH | Histone-arginine methyltransferase CARM1 | / | 0.709 | |
| 2y1x | SAH | Histone-arginine methyltransferase CARM1 | / | 0.707 | |
| 4wec | NAD | Short chain dehydrogenase | / | 0.707 | |
| 5dx8 | SFG | Histone-arginine methyltransferase CARM1 | / | 0.707 | |
| 3nmu | SAM | Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase | / | 0.705 | |
| 3v8v | SAM | Ribosomal RNA large subunit methyltransferase K/L | 2.1.1.173 | 0.703 | |
| 4rtr | SAM | DNA adenine methylase | 2.1.1.72 | 0.703 | |
| 1bc5 | SAH | Chemotaxis protein methyltransferase | 2.1.1.80 | 0.702 | |
| 3sso | SAH | Mycinamicin VI 2''-O-methyltransferase | / | 0.702 | |
| 1wy7 | SAH | Uncharacterized protein | / | 0.701 | |
| 4b63 | FAD | L-ornithine N(5)-monooxygenase | / | 0.701 | |
| 4yac | NAI | C alpha-dehydrogenase | / | 0.700 | |
| 3g07 | SAM | 7SK snRNA methylphosphate capping enzyme | 2.1.1 | 0.699 | |
| 1zmc | NAD | Dihydrolipoyl dehydrogenase, mitochondrial | 1.8.1.4 | 0.698 | |
| 4gol | SA8 | DNA adenine methylase | 2.1.1.72 | 0.698 | |
| 4rvd | SAM | D-mycarose 3-C-methyltransferase | / | 0.698 | |
| 1p1i | NAD | Inositol-3-phosphate synthase | 5.5.1.4 | 0.697 | |
| 3hvk | 719 | Catechol O-methyltransferase | 2.1.1.6 | 0.697 | |
| 4blw | SAH | Ribosomal RNA large subunit methyltransferase J | / | 0.697 | |
| 5eow | FAD | 6-hydroxynicotinate 3-monooxygenase | 1.14.13.114 | 0.697 | |
| 3dmh | SAM | Probable ribosomal RNA small subunit methyltransferase | / | 0.696 | |
| 2hmv | ADP | Ktr system potassium uptake protein A | / | 0.695 | |
| 4tlx | FDA | KtzI | / | 0.695 | |
| 4tm1 | FDA | KtzI | / | 0.695 | |
| 4tm4 | FDA | KtzI | / | 0.695 | |
| 4yuz | S4M | Spermidine synthase, putative | / | 0.695 | |
| 3grv | ADN | Probable ribosomal RNA small subunit methyltransferase A | / | 0.694 | |
| 1nw6 | SFG | Modification methylase RsrI | 2.1.1.72 | 0.693 | |
| 1p1h | NAD | Inositol-3-phosphate synthase | 5.5.1.4 | 0.693 | |
| 3a27 | SAM | tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase | / | 0.693 | |
| 3c3y | SAH | O-methyltransferase | / | 0.693 | |
| 4rto | SFG | DNA adenine methylase | 2.1.1.72 | 0.693 | |
| 1ahh | NAD | 7-alpha-hydroxysteroid dehydrogenase | 1.1.1.159 | 0.692 | |
| 1txz | APR | Probable ADP-ribose 1''-phosphate phosphatase YML087W | 3.1.3.84 | 0.692 | |
| 3fri | SAH | 16S rRNA methylase | / | 0.692 | |
| 4gc9 | SAM | Dimethyladenosine transferase 1, mitochondrial | 2.1.1 | 0.692 | |
| 5jdz | SAH | Methyl transferase | / | 0.692 | |
| 2zzm | SAM | tRNA (guanine(37)-N1)-methyltransferase Trm5b | 2.1.1.228 | 0.691 | |
| 3a4t | SFG | tRNA (cytosine(48)-C(5))-methyltransferase | 2.1.1 | 0.691 | |
| 4fwe | FAD | Lysine-specific histone demethylase 1B | 1 | 0.691 | |
| 4mb2 | ATP | Uncharacterized protein | / | 0.691 | |
| 1g38 | NEA | Modification methylase TaqI | 2.1.1.72 | 0.690 | |
| 1skm | SAH | Modification methylase HhaI | 2.1.1.37 | 0.690 | |
| 1sqf | SAM | Ribosomal RNA small subunit methyltransferase B | 2.1.1.176 | 0.690 | |
| 4rtj | SFG | DNA adenine methylase | 2.1.1.72 | 0.690 | |
| 5je4 | SAH | Methyl transferase | / | 0.690 | |
| 1y56 | FAD | 382aa long hypothetical sarcosine oxidase | / | 0.688 | |
| 1d2h | SAH | Glycine N-methyltransferase | 2.1.1.20 | 0.687 | |
| 1ges | FAD | Glutathione reductase | 1.8.1.7 | 0.687 | |
| 2pt6 | S4M | Spermidine synthase | / | 0.687 | |
| 3nn6 | FB0 | 6-hydroxy-L-nicotine oxidase | / | 0.687 | |
| 4iv8 | SAM | Phosphoethanolamine N-methyltransferase,putative | / | 0.687 | |
| 2eju | SAH | tRNA (guanine(26)-N(2))-dimethyltransferase | / | 0.686 | |
| 2z6u | SAH | Modification methylase HhaI | 2.1.1.37 | 0.686 | |
| 3ou2 | SAH | SAM-dependent methyltransferase | / | 0.686 | |
| 5e72 | SAM | N2, N2-dimethylguanosine tRNA methyltransferase | / | 0.686 | |
| 1f8r | FAD | L-amino-acid oxidase | 1.4.3.2 | 0.685 | |
| 7mht | SAH | Modification methylase HhaI | 2.1.1.37 | 0.685 | |
| 3ec7 | NAD | Inositol 2-dehydrogenase | / | 0.684 | |
| 4rtm | SAM | DNA adenine methylase | 2.1.1.72 | 0.684 | |
| 5dwq | SFG | Histone-arginine methyltransferase CARM1 | / | 0.684 | |
| 3vc1 | SAH | Geranyl diphosphate 2-C-methyltransferase | 2.1.1.255 | 0.683 | |
| 4dcm | SAM | Ribosomal RNA large subunit methyltransferase G | 2.1.1.174 | 0.683 | |
| 4xcx | SAH | Small RNA 2'-O-methyltransferase | / | 0.683 | |
| 5jr3 | SAH | Carminomycin 4-O-methyltransferase DnrK | 2.1.1.292 | 0.683 | |
| 4poo | SAM | Putative RNA methylase | / | 0.682 | |
| 1geg | NAD | Diacetyl reductase [(S)-acetoin forming] | 1.1.1.304 | 0.681 | |
| 3e8s | SAH | Uncharacterized protein | / | 0.681 | |
| 3lcu | SAH | 16S rRNA (guanine(1405)-N(7))-methyltransferase | 2.1.1.179 | 0.681 | |
| 5bxy | SAH | Putative RNA methylase family UPF0020 | / | 0.681 | |
| 4ckc | SAH | mRNA-capping enzyme catalytic subunit | 2.1.1.56 | 0.680 | |
| 4xxg | FAD | Cholesterol oxidase | 1.1.3.6 | 0.680 | |
| 3cbg | SAH | O-methyltransferase | / | 0.679 | |
| 3m6v | SAM | Ribosomal RNA small subunit methyltransferase F | / | 0.679 | |
| 3ou6 | SAM | SAM-dependent methyltransferase | / | 0.679 | |
| 3wdm | ADN | 4-phosphopantoate--beta-alanine ligase | 6.3.2.36 | 0.679 | |
| 4o29 | SAH | Protein-L-isoaspartate O-methyltransferase | / | 0.679 | |
| 4obw | SAM | 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial | / | 0.679 | |
| 5epe | SAH | Uncharacterized protein | / | 0.679 | |
| 1b4v | FAD | Cholesterol oxidase | 1.1.3.6 | 0.678 | |
| 1f3l | SAH | Protein arginine N-methyltransferase 3 | / | 0.678 | |
| 4eqg | A5A | Histidine triad nucleotide-binding protein 1 | 3 | 0.678 | |
| 2qa2 | FAD | Polyketide oxygenase CabE | / | 0.677 | |
| 3ldg | SAH | Uncharacterized protein | / | 0.677 | |
| 4eqe | KAA | Histidine triad nucleotide-binding protein 1 | 3 | 0.677 | |
| 1uay | ADN | Oxidoreductase | / | 0.676 | |
| 3uoz | FAD | 2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase | 1.14.13.160 | 0.676 | |
| 2ibt | NEA | Modification methylase TaqI | 2.1.1.72 | 0.675 | |
| 2px5 | SAH | Genome polyprotein | 2.7.7.48 | 0.675 | |
| 4kwc | SAH | Methyltransferase domain family | / | 0.675 | |
| 5bp9 | SAH | Putative methyltransferase protein | / | 0.675 | |
| 5e9w | SAH | mRNA cap guanine-N7 methyltransferase | 2.1.1.56 | 0.675 | |
| 1i2b | NAD | UDP-sulfoquinovose synthase, chloroplastic | 3.13.1.1 | 0.674 | |
| 2rgh | FAD | Alpha-Glycerophosphate Oxidase | / | 0.674 | |
| 3cn8 | FAD | Polyamine oxidase FMS1 | / | 0.674 | |
| 3a26 | MTA | tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase | / | 0.673 | |
| 4icy | FAD | PgaE | / | 0.673 | |
| 1r00 | SAH | Aclacinomycin 10-hydroxylase RdmB | 4.1.1 | 0.672 | |
| 2hnk | SAH | SAM-dependent O-methyltransferase | / | 0.672 | |
| 4fgz | SAH | Phosphoethanolamine N-methyltransferase | / | 0.672 | |
| 1nv8 | SAM | Release factor glutamine methyltransferase | 2.1.1.297 | 0.671 | |
| 2h00 | SAH | U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase | / | 0.671 | |
| 4krh | SAM | Phosphoethanolamine N-methyltransferase 2 | / | 0.671 | |
| 4qdk | SAH | Magnesium-protoporphyrin O-methyltransferase | 2.1.1.11 | 0.671 | |
| 4x3q | SAH | SibL | / | 0.671 | |
| 3epp | SFG | mRNA cap guanine-N7 methyltransferase | 2.1.1.56 | 0.670 | |
| 3g8a | SAH | Ribosomal RNA small subunit methyltransferase G | / | 0.670 | |
| 2nxe | SAM | Ribosomal protein L11 methyltransferase | 2.1.1 | 0.669 | |
| 3ids | NAD | Glyceraldehyde-3-phosphate dehydrogenase, glycosomal | 1.2.1.12 | 0.669 | |
| 4kdr | SAH | Ubiquinone biosynthesis O-methyltransferase | / | 0.669 | |
| 4ysh | FAD | Glycine oxidase | / | 0.669 | |
| 5e8j | SAH | mRNA cap guanine-N7 methyltransferase | 2.1.1.56 | 0.669 | |
| 5f8f | SFG | Possible transcriptional regulatory protein | / | 0.669 | |
| 2zcj | SAH | Modification methylase HhaI | 2.1.1.37 | 0.668 | |
| 2zzn | SAM | tRNA (guanine(37)-N1)-methyltransferase Trm5b | 2.1.1.228 | 0.668 | |
| 3cjq | SAH | Ribosomal protein L11 methyltransferase | 2.1.1 | 0.668 | |
| 3g5s | FAD | Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO | / | 0.668 | |
| 4rv9 | SAH | D-mycarose 3-C-methyltransferase | / | 0.668 | |
| 2iid | FAD | L-amino-acid oxidase | 1.4.3.2 | 0.667 | |
| 2q3e | UPG | UDP-glucose 6-dehydrogenase | 1.1.1.22 | 0.667 | |
| 3dzi | RGT | ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 | 3.2.2.6 | 0.667 | |
| 3iei | SAH | Leucine carboxyl methyltransferase 1 | 2.1.1.233 | 0.667 | |
| 1ger | FAD | Glutathione reductase | 1.8.1.7 | 0.666 | |
| 3pt6 | SAH | DNA (cytosine-5)-methyltransferase 1 | 2.1.1.37 | 0.666 | |
| 4nbu | NAI | 3-oxoacyl-(Acyl-carrier-protein) reductase | / | 0.666 | |
| 1qaq | SFG | rRNA adenine N-6-methyltransferase | 2.1.1.184 | 0.665 | |
| 2v74 | SAH | Histone-arginine methyltransferase CARM1 | / | 0.665 | |
| 3cty | FAD | Probable thioredoxin reductase | / | 0.665 | |
| 3ihg | FAD | Aklavinone 12-hydroxylase RdmE | / | 0.665 | |
| 2gv8 | FAD | Thiol-specific monooxygenase | 1.14.13 | 0.664 | |
| 2ign | FAD | Pyranose 2-oxidase | / | 0.664 | |
| 2j9l | ATP | H(+)/Cl(-) exchange transporter 5 | / | 0.664 | |
| 3dlc | SAM | SAM (And some other nucleotide) binding motif:Generic methyltransferase | / | 0.664 | |
| 3lfz | ADP | Uncharacterized protein MJ1225 | / | 0.664 | |
| 3oe4 | 610 | Catechol O-methyltransferase | 2.1.1.6 | 0.664 | |
| 1nc1 | MTH | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase | 3.2.2.9 | 0.663 | |
| 2c7q | SAH | Modification methylase HhaI | 2.1.1.37 | 0.663 | |
| 3qvw | NAD | Myo-inositol-1-phosphate synthase (Ino1) | / | 0.663 | |
| 4egu | 5GP | Putative histidine triad (HIT) protein | / | 0.663 | |
| 3pt9 | SAH | DNA (cytosine-5)-methyltransferase 1 | 2.1.1.37 | 0.662 | |
| 4u2t | FAD | Cholesterol oxidase | 1.1.3.6 | 0.662 | |
| 5dst | SAH | Protein arginine N-methyltransferase 8 | 2.1.1 | 0.662 | |
| 2okc | SAM | Probable type I restriction enzyme BthVORF4518P M protein | 2.1.1.72 | 0.661 | |
| 3zwo | G2Q | ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase | 3.2.2.6 | 0.660 | |
| 4c04 | SFG | Protein arginine N-methyltransferase 6 | / | 0.660 | |
| 4hc4 | SAH | Protein arginine N-methyltransferase 6 | / | 0.660 | |
| 10mh | SAH | Modification methylase HhaI | 2.1.1.37 | 0.659 | |
| 1kvr | NAD | UDP-glucose 4-epimerase | 5.1.3.2 | 0.659 | |
| 3sx2 | NAD | Uncharacterized protein | / | 0.659 | |
| 4u7t | SAH | DNA (cytosine-5)-methyltransferase 3A | 2.1.1.37 | 0.659 | |
| 3tos | SAH | CalS11 | / | 0.658 | |
| 5dbj | FAD | FADH2-dependent halogenase PltA | / | 0.658 | |
| 1nah | NAD | UDP-glucose 4-epimerase | 5.1.3.2 | 0.657 | |
| 1rp0 | AHZ | Thiamine thiazole synthase, chloroplastic | / | 0.657 | |
| 2z86 | UGA | Chondroitin synthase | 2.4.1.175 | 0.657 | |
| 3c96 | FAD | Flavin-containing monooxygenase | / | 0.657 | |
| 4dmg | SAM | Uncharacterized protein | / | 0.657 | |
| 4eak | ATP | 5'-AMP-activated protein kinase subunit gamma-1 | / | 0.657 | |
| 1rje | SAH | Leucine carboxyl methyltransferase 1 | 2.1.1.233 | 0.656 | |
| 2qae | FAD | Dihydrolipoyl dehydrogenase | 1.8.1.4 | 0.656 | |
| 2zwv | SAH | Probable ribosomal RNA small subunit methyltransferase | / | 0.656 | |
| 3pgx | NAD | Uncharacterized NAD-dependent oxidoreductase MAP_4146 | / | 0.656 | |
| 1gd1 | NAD | Glyceraldehyde-3-phosphate dehydrogenase | / | 0.655 | |
| 1kr5 | SAH | Protein-L-isoaspartate(D-aspartate) O-methyltransferase | 2.1.1.77 | 0.655 | |
| 1orh | SAH | Protein arginine N-methyltransferase 1 | / | 0.655 | |
| 1y8q | ATP | SUMO-activating enzyme subunit 2 | 6.3.2 | 0.655 | |
| 3atr | FDA | Conserved Archaeal protein | / | 0.655 | |
| 3ruc | NAD | UDP-N-acetylglucosamine 4-epimerase | / | 0.655 | |
| 4ft4 | SAH | DNA (cytosine-5)-methyltransferase 1 | 2.1.1.37 | 0.655 | |
| 4r6x | SAH | Phosphoethanolamine N-methyltransferase | / | 0.655 | |
| 5fs7 | FAD | Apoptosis-inducing factor 1, mitochondrial | 1.1.1 | 0.655 | |
| 3axs | SFG | tRNA (guanine(26)-N(2)/guanine(27)-N(2))-dimethyltransferase | / | 0.654 | |
| 3e23 | SAM | Uncharacterized protein | / | 0.654 | |
| 3l8k | ADP | Dihydrolipoamide dehydrogenase (PdhD-3) | / | 0.654 | |
| 5g3s | FDA | Flavin-dependent L-tryptophan oxidase VioA | / | 0.654 | |
| 1mht | SAH | Modification methylase HhaI | 2.1.1.37 | 0.653 | |
| 3dh0 | SAM | Uncharacterized protein | / | 0.653 | |
| 3ldf | SAH | Uncharacterized protein | / | 0.653 | |
| 3nwe | 662 | Catechol O-methyltransferase | 2.1.1.6 | 0.653 | |
| 3qvx | NAD | Myo-inositol-1-phosphate synthase (Ino1) | / | 0.653 | |
| 4iv0 | SAM | Phosphoethanolamine N-methyltransferase, putative | / | 0.653 | |
| 4y9d | NAI | C alpha-dehydrogenase | / | 0.653 | |
| 2c29 | NAP | Dihydroflavonol 4-reductase | / | 0.652 | |
| 2pkm | ADN | Adenosine kinase | 2.7.1.20 | 0.652 | |
| 4qi4 | FAD | Cellobiose dehydrogenase | / | 0.652 | |
| 1rjd | SAM | Leucine carboxyl methyltransferase 1 | 2.1.1.233 | 0.651 | |
| 2np7 | NEA | Modification methylase TaqI | 2.1.1.72 | 0.651 | |
| 3bwc | SAM | Spermidine synthase, putative | / | 0.651 | |
| 3fws | ANP | Transcriptional repressor CcpN | / | 0.651 | |
| 3qj4 | FAD | Renalase | / | 0.651 | |
| 3qv1 | NAD | Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic | 1.2.1.13 | 0.651 | |
| 3vc2 | SAH | Geranyl diphosphate 2-C-methyltransferase | 2.1.1.255 | 0.651 | |
| 4udr | FAD | 5-(hydroxymethyl)furfural oxidase | / | 0.651 | |
| 1u28 | NAD | NAD(P) transhydrogenase subunit alpha part 1 | 1.6.1.2 | 0.650 | |
| 3all | FAD | 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase | / | 0.650 | |
| 4gh5 | NAD | Short-chain dehydrogenase/reductase SDR | / | 0.650 | |
| 4mwz | SAM | Phosphoethanolamine N-methyltransferase, putative | / | 0.650 | |
| 4q7f | 3D1 | Uncharacterized protein | / | 0.650 |