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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3bej MUF Bile acid receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3bej MUFBile acid receptor / 1.189
3iw1 ASDSteroid C26-monooxygenase 1.14.13.141 0.694
1drt PCVClavaminate synthase 1 1.14.11.21 0.688
1xu9 CPSCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.688
1xu7 CPSCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.687
1zhy CLROxysterol-binding protein homolog 4 / 0.685
3l03 4OHEstrogen receptor / 0.683
2yja ESTEstrogen receptor / 0.680
3uud ESTEstrogen receptor / 0.671
5dxg ESTEstrogen receptor / 0.667
3s79 ASDAromatase 1.14.14.14 0.666
4qe6 JN3Bile acid receptor / 0.665
2d06 ESTSulfotransferase 1A1 2.8.2.1 0.664
2j7x ESTEstrogen receptor beta / 0.663
2piu DHTAndrogen receptor / 0.662
1t5z DHTAndrogen receptor / 0.661
5hyr ESTEstrogen receptor / 0.661
4j6d TESCytochrome P450 monooxygenase / 0.660
1fdu ESTEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.657
3cot STR3-oxo-5-beta-steroid 4-dehydrogenase / 0.656
4jbt ASDCytochrome P450 monooxygenase / 0.655
4nky 3QZSteroid 17-alpha-hydroxylase/17,20 lyase / 0.655
1t63 DHTAndrogen receptor / 0.650