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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3be9 P04 Casein kinase II subunit alpha 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3be9 P04Casein kinase II subunit alpha 2.7.11.1 1.123
2pvn P63Casein kinase II subunit alpha 2.7.11.1 0.789
2pvl P55Casein kinase II subunit alpha 2.7.11.1 0.669
4grb 0XGCasein kinase II subunit alpha 2.7.11.1 0.669
3u4u LNHCasein kinase II subunit alpha 2.7.11.1 0.667