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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3b8z 294 A disintegrin and metalloproteinase with thrombospondin motifs 5 3.4.24

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3b8z 294A disintegrin and metalloproteinase with thrombospondin motifs 5 3.4.24 1.149
1zxc IH6Disintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.763
2i47 KGYDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.736
3kry 3KRCollagenase 3 3.4.24 0.706
2ow1 7MRMatrix metalloproteinase-9 3.4.24.35 0.703
3o2x 3O2Collagenase 3 3.4.24 0.693
3kmc 403Disintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.650