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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3b8h NAD Exotoxin A 2.4.2.36

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3b8h NADExotoxin A 2.4.2.36 1.070
3b82 NADExotoxin A 2.4.2.36 1.023
3b78 NADExotoxin A 2.4.2.36 1.007
2zit NADExotoxin A 2.4.2.36 0.950
1zm4 TADExotoxin A 2.4.2.36 0.810
1tox NADDiphtheria toxin / 0.719
3q9o NADCholix toxin 2.4.2.36 0.719
4xzj NADPutative NAD(+)--arginine ADP-ribosyltransferase Vis 2.4.2.31 0.677
2rd6 78PPoly [ADP-ribose] polymerase 1 2.4.2.30 0.653