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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3b4f TUO Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.859
2pow I7CCarbonic anhydrase 2 4.2.1.1 0.758
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.735
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.725
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.721
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.720
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.718
1okn STBCarbonic anhydrase 2 4.2.1.1 0.717
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.715
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.714
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.713
4uov AZMCarbonate dehydratase / 0.713
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.712
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.711
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.708
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.708
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.707
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.707
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.705
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.704
1okm SABCarbonic anhydrase 2 4.2.1.1 0.703
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.702
3sax E50Carbonic anhydrase 2 4.2.1.1 0.702
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.701
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.700
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.700
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.699
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.699
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.697
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.696
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.694
3f7b AG5Carbonic anhydrase 4 4.2.1.1 0.693
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.692
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.692
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.691
3mho J43Carbonic anhydrase 2 4.2.1.1 0.691
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.689
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.689
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.687
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.687
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.686
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.685
4xiw AZMCarbonic anhydrase, alpha type / 0.685
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.683
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.683
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.683
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.681
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.680
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.680
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.680
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.679
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.679
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.679
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.678
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.676
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.675
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.674
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.673
3myq E27Carbonic anhydrase 2 4.2.1.1 0.673
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.673
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.672
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.672
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.670
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.667
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.667
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.667
2h15 B19Carbonic anhydrase 2 4.2.1.1 0.666
3l14 I7BCarbonic anhydrase 2 4.2.1.1 0.666
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.666
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.665
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.665
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.664
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.662
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.662
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.661
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.661
4knn E1FCarbonic anhydrase 13 4.2.1.1 0.661
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.660
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.659
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.658
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.657
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.657
4kni E1ECarbonic anhydrase 2 4.2.1.1 0.657
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.656
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.656
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.656
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.656
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.655
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.654
3po6 DT9Carbonic anhydrase 2 4.2.1.1 0.654
1eou SMSCarbonic anhydrase 2 4.2.1.1 0.653
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.653
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.652
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.652
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.651
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.650
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.650